| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_2030 |
|---|
| Symbol | |
|---|
| ID | 8544412 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 2800489 |
|---|
| End bp | 2802048 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 646386733 |
|---|
| Product | deoxyribodipyrimidine photolyase-related protein |
|---|
| Protein accession | YP_003266468 |
|---|
| Protein GI | 262195259 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3046] Uncharacterized protein related to deoxyribodipyrimidine photolyase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0662893 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.30492 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACTT CTCCGCGCGA TCTCTTCGTC ATCCTCGGCA ACCAGCTCGT CCCCTTTCGC
CATCTGCGCC CGCATCGCGA TGCGGCGTTC TTCATGGCCG AGGACCTGGG TTTATGTACG
TACGTCCGAC ATCACAAGCA GAAGATCGCC CTGTTCTTGG CCGCGATGCG CGCGCACGCG
GACGAACTGC GGCGCAACGG CTGCGCGCTG CACTACGAGT CGCTGGACGA GCAGGCCGGA
GCGGAGCTAC GCACCAAGTA CGAGACCAAG CTGGCCCGCT ACGCCGATCG CGCCGGACCG
TTCGACCGGC TGCTGAGCTT CGAGGTCGAG GACCTGTTCT TCGAGCGCCG TCTCGACGCG
GTGGCCGACG AGCTCGGGCT CGAGCGGGTG ACGCTGGCGA GTCCGATGTT TCTGTGCTCG
CGCGAGCGCT TCGCCGGGTA CGCGCGCGGG GCCACGCGCT TGCGCATGGC CGATTTCTAC
GAGCGCCAGC GCCGCCATCT GGGCATTTTG ATCGACAGCG AGGGCGCGCC GGTGGGCGGG
CGCTGGAGTT TCGACCGCGA CAATCGCGAA AAACTGCCGC GGGATGAGTC CTTGCCGGCG
GCGCCCGCGG CCGCGCCCAC CGATCACGTG CGCGCGCTCA TCGCCCTGGT CGGCGAGCGC
TTTGCCGACC ACCCGGGCGA ACTCAGCGAG GCGGGCTGGT GGCTGCCGAG TACGCGGCGG
CAGGCGCTGG CCTGGCTGCG CGGGTTTTTG GACGAGCGTC TCGAACGCTT CGGCGCCTAC
GAGGACGCGC TGTCCACGCG CGGGCCGGTG CTGTTCCACA GCGTGCTCAG CCCGCTGCTC
AACCTCGGCC TGATCACGCC GGACGAGGTG GTCGAGCGCA CGCTGGCGCA CGCCGAGGAC
CACCGGGTGC CGCTCAACTC GCTCGAGGGC TTTCTGCGCC AGATCATCGG CTGGCGCGAG
TTCGTACGCG GCGTCTACCG CGGCCATTCC GAGCAGCAGG AAACGGCCAA CGCCTGGGGT
CACCACCGCC GCATGAAGCC GTGCTGGTGG GACGCGAGCA CCGGGCTGCG CCCGCTCGAC
GACGCCATCG CCAAGGTGCT GCGGATGGGC TGGGCGCACC ACATCGAGCG GCTCATGGTG
CTGTGCAATC TGATGAACCT GTGCGAGATC GAGCCGCGAC AGGTGCACGA TTGGTTTCTG
GCCATGTTCG TCGACGCCGC CGACTGGGTG ATGGGGCCCA ACGTCTACGG CATGGGCCTG
ATGAGCGACG GCGGCCTGTT CGCGACCAAA CCGTATATCT GCGCCAGCAA CTATCTGCTG
AAGATGAGCG ACTACGGCCG GCCGGCGGCG GGCGAGGTGT TCCCCTTCGG CGACAGCGAC
TGGTGCACGG TCGTCGACGG CCTGTACTGG CGCTTCGTGC GCGAGCACCG CGACTTCTTC
GCCGGGCACC CGCGCATGGC GGTGATGGCG GCTTCCCTCG ACCGCATGTC CGGGGACAAG
AAGCAGCGTA TCTTTGCGGC CGCGTCGGCG TTTCTCGACC GGGTGACCGA GACGCCCTGA
|
|---|
| Protein sequence | MATSPRDLFV ILGNQLVPFR HLRPHRDAAF FMAEDLGLCT YVRHHKQKIA LFLAAMRAHA
DELRRNGCAL HYESLDEQAG AELRTKYETK LARYADRAGP FDRLLSFEVE DLFFERRLDA
VADELGLERV TLASPMFLCS RERFAGYARG ATRLRMADFY ERQRRHLGIL IDSEGAPVGG
RWSFDRDNRE KLPRDESLPA APAAAPTDHV RALIALVGER FADHPGELSE AGWWLPSTRR
QALAWLRGFL DERLERFGAY EDALSTRGPV LFHSVLSPLL NLGLITPDEV VERTLAHAED
HRVPLNSLEG FLRQIIGWRE FVRGVYRGHS EQQETANAWG HHRRMKPCWW DASTGLRPLD
DAIAKVLRMG WAHHIERLMV LCNLMNLCEI EPRQVHDWFL AMFVDAADWV MGPNVYGMGL
MSDGGLFATK PYICASNYLL KMSDYGRPAA GEVFPFGDSD WCTVVDGLYW RFVREHRDFF
AGHPRMAVMA ASLDRMSGDK KQRIFAAASA FLDRVTETP
|
|---|
| |