| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_1839 |
|---|
| Symbol | |
|---|
| ID | 8544221 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haliangium ochraceum DSM 14365 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013440 |
|---|
| Strand | + |
|---|
| Start bp | 2530923 |
|---|
| End bp | 2533883 |
|---|
| Gene Length | 2961 bp |
|---|
| Protein Length | 986 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 646386545 |
|---|
| Product | MJ0042 family finger-like protein |
|---|
| Protein accession | YP_003266280 |
|---|
| Protein GI | 262195071 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02098] MJ0042 family finger-like domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0213586 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.108328 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATATTC GCTGCGAGAA GTGCGGAACC GAATATGAGC TTGAAGAAGA TCGCCTCAAG
CCGGGTGGTG TATCGGTCAA GTGCACCGAG TGCGGGCACA TCTTCCGGGT GCGCCGGCAG
GCGATCACGA GCGTCGGCTT CGGCGGTCTG GACAGCGGTC CGACGCGCGT AAGCGAGTCA
TCGTTCGACG ACGAGCGCAC CCAGGTCGAG AACAGGCCCA AGGGCGAGCG CGGCGAGGAG
GACGAGAGCC GCGACACCAT CCCGGTGCCG ACGCTGTCGC CCGCGGATGC CGAAAAAGCG
CGCCGCGCCA TGCGCATGAC GCCCTCGAGC GCGCGCTCGC AGCGGCGCTC GCGCGAGCGC
AACTGGCTGG TGCGGCTGCC CGGCGGCACC ATCGAGGCGT GCCGCGAGCT GGCCACGCTG
CACGAGTGGA TCGTGCTCGG CAAGGTGACG CGCAGCTCGG GGATTTCGCG CACCGGCAAG
ACCTGGAAGC GCCTGGGTGA CATCAAGGAG CTCGGCGCTC TGTTCGACGC CGCCGAAGAC
GCCCGGCGCG CGCGTCGCTC GGGGCAACCC GGACAGCCGG TCGCGCGACC CGGCGACGGC
ATCCCGCGCG AGCATATCCC CGACCCGGCC TCGGGGCCCA TCCCGGATTC GTTCTCGGCC
AGCGGCGCCG TGGCCCAGTC CGATGCGACG CGCCGCTCCG GGCCGCTGGT GGCGCCACCC
GAGAGCGCGT TGCCGGCGTC GTCGCTGTTA GACGGCGCCT TTGCCGACGA CGACGACGAC
GAGCTGGACG ACGACGGCAG CGAGCCGCTC GCGCTGCGCA ACCGGGCTCG CGACGACGAT
GACGGCGCGC TGATGGCCTT TGACGAGGCC GGCGAGAGCG TGACCACCGA GGGCGAGCGT
CCGGTGCTCG CCGAGGACGC GCCCGCACGC GCGCCCGGTG CCGCTCGCGC TGCGGCGGCA
GTCGCGCCAG AGCCCGACGA TGACGACATC GACGATGCCG ACATCGACGA TACCGCGGAC
GCGCCCGATC ATGATGTCGA TGCCGATGCC GCGGACGCCG CCGCCGACGC CGCCGCGCTC
GACGAGGACG ATATGCCCAA GGATACCTCC AACGCCGATT CACCGACCGC GGACGCGGCC
GCCGAGGGCG ACGCCAACGC CGCTGAGCCG CGCCAGCGCC CGGCGTGGGC GGCCCGCGCC
AGCGCCGACG GACCCGAAGG ACCGCGCGCG CTCGACCGCG CCGGCCTGGC CAAGGTCGCG
GCCGAGGATG GCCGCACCGG GCCCTCGGGC GGGCTGTCGC GCCGCAGCAG GGTGCAGGAC
GTGGCCTTTG GCCCCGGCCG CGTGCGCGCG CTGTCCGAGA GCGAAGACAG CGAGGACGGC
GAGGGCGCGG CGGCGCGCGA CGAGGAGCGA GACCAGCCCT CGAGCGGCGT GGGCCGCTGG
GTGGTGCTGG TCGCGTTGCT GCTGATGGCG GCGTCGGCCG GCGTGGTCTA CATGCTGGTG
TTCCGGCCCA CGGGCGAGAC CATCGAGGGC GTGCTGGTGG GCGGCGACGC GGGCCTGGCC
GAGCTGGCCG GAGGCGCCGA TGGCGGCCTC GACACGGTCG CGCTGGCCGA TCAACTGGGC
GCCGCCCTGG CGCGCGATAC CGACGCCGGA CTCGACGCCT TTGCCCGGCA GCTCGAGGCG
CTCGAGGCCG AGCTCGGCCA GAGCGAGGAG CTGCTGGTGG CCCGGGCCCG GGTGCGGGCG
GCGCGCGCGC AGCATCTCTT CGACCGCGCG GCCTTGGCCG ACCAGGCGGA CAAAAACCAG
CAGGCGAGCA CGCTGCAACG CGAGGCCGAC GAGATGGTGC TCGAGGCCCT CACGCTGGCT
CAGCGCGCGC TGCAGAAGCA GCGCAGCAAC CCCGAGGCGC TGGTGGCCAT GGCCGACGTG
CAGCGCCTCC AGGGGCGCAA CGCGCGCCAG ATCGACAGCT ATCTCGGCGA GGTCGGCAAG
GACACCGAGG CCCACCGCGA GGCCCGCCTG GTGCGCGCCA TGGCGCTGGC CCAGAACAAG
CGCGAGCGCG AGCAGGCGGT CAAGATCTTC GAGGCGCTCG AGGCCGAGGG CGAGGAGGAG
GGCTGGGGCG ACCTGCGGCC GCGCACGCGC CTGGCCATGC TGGCGTTTAT CAGCGAGCGC
TACGAGGCCG CCGAGGCCCA CGCCAACGCC GTGCTCAAGC GCGAACCCGC GCACGAGATC
GCGCGCGCGC TGCTCGACCG CCTCGAGGCC AGCGCCGGCG TCGATACCAG CGATCCCATG
CCGGTGGAGG AGGGGCCGGA CGATGGCGAT GGCGATGGCG ATACCGGCGC GGGCCGCGAC
ACCACGCCCA GCAAGCCGAC GACGCCGACC CCGACGCCGT CGCCGACGCC GACCCCGCCG
GCCAAGGATC CGCCGAGCAA GCCGGCGACC TACGCCGAGC TGCTGGCCCA GGCCAAGAGC
AAGGCGCAGG CCGGACAGTG CGGCGACGCG ATCCTGCTGT TCGAGCGCGC GCTCGACGAG
AACCCCATCG GCGTCGAGGC GCTCAACGGC ACCGGCTCCT GCCACCTGAG CCGGCGCGAA
TACTCGACCG CGCGCGGCAA GTTCCGCGCG GTGCTCGGCA TCGCCTCGGG CAACGCCGAC
GCCATCTGGG GCATGGCCGA GTCGTATCGC CAGCAGGGCA ACGGCGGCGA GGCCGTGCAG
TGGTATCGCC GCTACCTCGA CGCCCACCCG GCCGGCGGCC GCGCCGACGA AGCGCGTCGC
CGCGTCGACG AGCTGGGCGG CAGCGGCGGT GGCGGCTCGG ACGATGGCGC GGACGACGAC
GACGCGCCGG CTCCCAGCGC GCCGGCTCCT GCGCCAGCTC CGACCCCGGC CCCGACGCCG
GCTCCGGCTC CGGCGCCAGC GCCGAGCCCG GCTCCGGGCG GCGACGGTAC GGCTCCGGGC
GCGGCCGAAC AGATTCCCTG A
|
|---|
| Protein sequence | MDIRCEKCGT EYELEEDRLK PGGVSVKCTE CGHIFRVRRQ AITSVGFGGL DSGPTRVSES
SFDDERTQVE NRPKGERGEE DESRDTIPVP TLSPADAEKA RRAMRMTPSS ARSQRRSRER
NWLVRLPGGT IEACRELATL HEWIVLGKVT RSSGISRTGK TWKRLGDIKE LGALFDAAED
ARRARRSGQP GQPVARPGDG IPREHIPDPA SGPIPDSFSA SGAVAQSDAT RRSGPLVAPP
ESALPASSLL DGAFADDDDD ELDDDGSEPL ALRNRARDDD DGALMAFDEA GESVTTEGER
PVLAEDAPAR APGAARAAAA VAPEPDDDDI DDADIDDTAD APDHDVDADA ADAAADAAAL
DEDDMPKDTS NADSPTADAA AEGDANAAEP RQRPAWAARA SADGPEGPRA LDRAGLAKVA
AEDGRTGPSG GLSRRSRVQD VAFGPGRVRA LSESEDSEDG EGAAARDEER DQPSSGVGRW
VVLVALLLMA ASAGVVYMLV FRPTGETIEG VLVGGDAGLA ELAGGADGGL DTVALADQLG
AALARDTDAG LDAFARQLEA LEAELGQSEE LLVARARVRA ARAQHLFDRA ALADQADKNQ
QASTLQREAD EMVLEALTLA QRALQKQRSN PEALVAMADV QRLQGRNARQ IDSYLGEVGK
DTEAHREARL VRAMALAQNK REREQAVKIF EALEAEGEEE GWGDLRPRTR LAMLAFISER
YEAAEAHANA VLKREPAHEI ARALLDRLEA SAGVDTSDPM PVEEGPDDGD GDGDTGAGRD
TTPSKPTTPT PTPSPTPTPP AKDPPSKPAT YAELLAQAKS KAQAGQCGDA ILLFERALDE
NPIGVEALNG TGSCHLSRRE YSTARGKFRA VLGIASGNAD AIWGMAESYR QQGNGGEAVQ
WYRRYLDAHP AGGRADEARR RVDELGGSGG GGSDDGADDD DAPAPSAPAP APAPTPAPTP
APAPAPAPSP APGGDGTAPG AAEQIP
|
|---|
| |