Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_1286 |
Symbol | |
ID | 8543668 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | + |
Start bp | 1692447 |
End bp | 1694930 |
Gene Length | 2484 bp |
Protein Length | 827 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 646386002 |
Product | ABC transporter related protein |
Protein accession | YP_003265737 |
Protein GI | 262194528 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0178] Excinuclease ATPase subunit |
TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.19653 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.00243826 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAGTAAAG CCAAAAAGGC GGCCAAGAAG TCGGCCAAGA AGTCGGACAC GAAGGCTGCC AAGAAGTCGG ACACGAAGTC GGACACGAAG TCGGTAAAGA AGACCAAGTC GGAGCCGGCC GGCGACGGCG ACGCACGGCA CAGCGCCGAC AGCCACGACT GGATCCGCGT GCACGGCGCG CGCGTCAACA ACCTCCAGGA CGTGAGCATC GAGCTGCCCA AGCGCCGCCT GACCGTGTTC ACGGGCGTCT CGGGCTCGGG CAAGAGCTCG CTGGTGTTCG GCACCATCGC GGCCGAGTCG CAGCGGCTGA TCAACGAGAC CTACAGCGCC TTCGTGCAGG GCTTCATGCC GACCCTGGCG CGGCCCGAGG TCGACGTGCT CGAGGGATTG ACCACCGCGA TCCTGGTCGA CCAGCAGCGC ATGGGCTCGG ACCCGCGCTC CACGGTCGGC ACCGCCACCG ATGCCAACGC CATGCTGCGG ATTCTCTTCA GCAGACTGGG CAAGCCGCAC GTGGGCTCGC CCAACGCGTT CTCCTTCAAT GTCGCCTCGG TGCGCGCCAG CGGCGTGTTC TCGAGCGACC GCGGCGACGG CCAGGCGGTG AAGAAGACCT TCACCCGCAC CGGCGGCATG TGCCCGCGCT GCGAGGGCCG GGGCAATGTC TCGGACATCG ATCTCGCCCA GTTGTACGAC GACACCAAGT CGCTGGCCGA TGGTCCCTTT ACCATCCCGG GCTACACGCC GGGCGGCTGG GCCGAGCGCC AGTACACCGA CAGCGGCTTT TTCGATCCGA AGAAGCCGAT CCGCAAGTAC ACCAAGAAGG AGATGCACGA CTTTCTCCAC AAGGATCCGG TCAAGATCAA GATGGGCGGC ATCAACCGCA CCTACATGGG CCTGCTGCTG CGTTTACAGC AGTCGTTCCT GTCCAAGGAC CGCGAGTCGA TGCAGCCGCA TATCCGCGCC TTTGTCGACC GCGCGGTCAC CTTTGGCGTC TGCCCCGAGT GCGAGGGCAC GCGTCTCAGC GAGGCGGCGC GCTCGTCGAA GATCGCGGGC ATCAACATCG CCGACGCCTG CGCCATGGAG ATCCGCGATC TCGCCGAGTG GGTGCGCGGC CTCGACGAGC CCTCGGTGGC GCCGCTGCTC ACGGCCCTGG GGCATACGCT CGACTCCTTC GTCGAGATCG GCCTGGGATA CCTCTCGCTC GATCGCCCCT CGGGCACGCT CTCGGGCGGC GAGGCCCAGC GCACCAAGAT GATCCGCCAC CTGGGCTCGG CGCTCACCGA TATCACCTAC GTGTTCGACG AGCCCAGCAT CGGCCTGCAT CCGCACGACA TCCAGCGCAT GAACGAGCTG CTGTTGCGGC TGCGCGACAA GGGCAACACC GTGCTGGTGG TCGAGCACAA GCCGGAGATG ATCGCCATCG CCGACCACGT GGTCGATCTC GGACCCGGCG CCGGCAGCGG CGGCGGCACC ATCTGCTTCG AGGGCAGCCT CGAGGAGCTG CGTGCCAGCG GGACCATCAC CGGGCGCCAC CTGGACGACC GCGCCGCGCT CAAGCAGCAG GTGCGCGAGG CCAGCGGCGC GCTCGAGATC CGCGGCGCCT CCACGCACAA CCTGCGCGGG GTCGATGTCG ACATTCCGCT CGGCGTATTG TGCGTGGTCA CGGGCGTGGC CGGCTCCGGC AAGAGCTCGC TGATCCACGG CTCCATCCCT GCGGGCGCCG AGGTCGTGGC TATCGATCAG GACCCGATCC GAGGCTCGCG GCGCAGCAAC CCGGCGACCT ACACCGGCCT GCTCGACCCG ATCCGCAAAG CCTTTGCCAA GGCCAACGGC GTCAAACCGG CGCTGTTCAG CGCCAACTCC GAGGGCGCGT GTCCCAACTG CAACGGCCTC GGCGTCATCT ACACCGACCT GGCGATGATG GCCGGCGTCG CCACCACCTG CGAGGAGTGC GAGGGCAAGC GCTTCGAGGT CTCGGTGCTC GACCACAAGC TCGGCGGGCG CGACATCAGC GAGGTGTTGG CCATGTCGGT GAGCGAGGCG GCCGCGTTCT TCGGCGAGGG CGAGGCGCGC ACGCCGGCGG CGCTCAAGGT TCTCGACCGC TTGGTCGACG TCGGGCTGGG TTACATTCGT CTCGGGCAGC CGCTGCCGAC GCTCTCTGGC GGCGAGCAGC AGCGCCTCAA GCTGGCGTCC CACATGGCCG AAAAAGGCGG CGTCTACGTG CTCGATGAGC CGACCACGGG CCTGCACCTG GCCGACGTCG AGCAGCTCCT GGCTTTGCTC GACCGACTGG TCGATGCCGG AAAGTCGGTC ATCGTCATCG AGCACCACCA GGCGGTGATG GCGCACGCCG ACTGGATCAT CGACCTCGGC CCCGGTGCCG GCAGCGAGGG CGGCGAGATT GTCTTCGAGG GCACGCCGGC CCAGCTCGTG GCTGCGCGCG CGACGCTCAC GGGCAAGCAT CTCGCCGCGT ACATCGGCGC CTGA
|
Protein sequence | MSKAKKAAKK SAKKSDTKAA KKSDTKSDTK SVKKTKSEPA GDGDARHSAD SHDWIRVHGA RVNNLQDVSI ELPKRRLTVF TGVSGSGKSS LVFGTIAAES QRLINETYSA FVQGFMPTLA RPEVDVLEGL TTAILVDQQR MGSDPRSTVG TATDANAMLR ILFSRLGKPH VGSPNAFSFN VASVRASGVF SSDRGDGQAV KKTFTRTGGM CPRCEGRGNV SDIDLAQLYD DTKSLADGPF TIPGYTPGGW AERQYTDSGF FDPKKPIRKY TKKEMHDFLH KDPVKIKMGG INRTYMGLLL RLQQSFLSKD RESMQPHIRA FVDRAVTFGV CPECEGTRLS EAARSSKIAG INIADACAME IRDLAEWVRG LDEPSVAPLL TALGHTLDSF VEIGLGYLSL DRPSGTLSGG EAQRTKMIRH LGSALTDITY VFDEPSIGLH PHDIQRMNEL LLRLRDKGNT VLVVEHKPEM IAIADHVVDL GPGAGSGGGT ICFEGSLEEL RASGTITGRH LDDRAALKQQ VREASGALEI RGASTHNLRG VDVDIPLGVL CVVTGVAGSG KSSLIHGSIP AGAEVVAIDQ DPIRGSRRSN PATYTGLLDP IRKAFAKANG VKPALFSANS EGACPNCNGL GVIYTDLAMM AGVATTCEEC EGKRFEVSVL DHKLGGRDIS EVLAMSVSEA AAFFGEGEAR TPAALKVLDR LVDVGLGYIR LGQPLPTLSG GEQQRLKLAS HMAEKGGVYV LDEPTTGLHL ADVEQLLALL DRLVDAGKSV IVIEHHQAVM AHADWIIDLG PGAGSEGGEI VFEGTPAQLV AARATLTGKH LAAYIGA
|
| |