Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hoch_0167 |
Symbol | |
ID | 8542546 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Haliangium ochraceum DSM 14365 |
Kingdom | Bacteria |
Replicon accession | NC_013440 |
Strand | + |
Start bp | 247628 |
End bp | 251113 |
Gene Length | 3486 bp |
Protein Length | 1161 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 646384963 |
Product | UvrD/REP helicase |
Protein accession | YP_003264701 |
Protein GI | 262193492 |
COG category | [L] Replication, recombination and repair [S] Function unknown |
COG ID | [COG0210] Superfamily I DNA and RNA helicases [COG1379] Uncharacterized conserved protein |
TIGRFAM ID | [TIGR00375] conserved hypothetical protein TIGR00375 |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATGTGC CCACGGCCAA GACGAGCTTC TTCGCGGACC TCCACACTCA CTCCAAGTAT GCAAGAGCAA CCAGTAAGCT GAGTGATCTA GAGCATTTGG CTTACTGGGG AGCGAAGAAA GGAATCTCGG TCGTGGGCAC TGGTGATTTC ACGCACCCGG CCTGGCGGGG CGAGCTGCGC GACAAGCTGG TGCCGGCCGA GCCGGGGCTG TTCCGGCTGC GCGAGGACAT CGAGCGCGAG GTGCGCGCGC GCCTGGACGT GCCGGTGCGC GGCCTGCCGC GCTTCCTGCT CTCGGTCGAG ATCTCGACCA TCTATAAGAA GGGCGACAAG ACCCGCAAGG TCCACCATCT GATCTACGCG CCCGACTTCG ACAGCGTCGA CCGCATGGTC GAGAGCCTGG CCAAGATCGG CAACCTGCGC GCCGACGGCC GGCCCATCCT CGGCCTCGAC TCGCGCCATC TGCTCGAGAT CGCGCTGTCC GCGGGCGAGG GCTGCTACCT GGTGCCGGCG CACGTGTGGA CGCCGTGGTT CGCCGTGCTC GGCTCCAAGT CGGGCTTCGA CGCGGTCGCC GACTGCTACG GCGACCTGGC CGAGCACATC TTCGCCGTCG AGACCGGGCT GTCCTCCGAC CCGCCCATGA ACTGGTGCCT GTCGTCGCTC GACCGCTACA CCCTGGTGTC CAATTCGGAC GCGCACTCGC CGCCCAAGCT CGGCCGCGAG GCCAACGTGT TCACCTGCGA CATGGACTAC TTCGCCATGC GTCGCGCGCT CGAGACCCGC GAGGGCTTCG CGGGCACGGT CGAGTTTTTT CCCGAGGAGG GCAAATACCA CCTCGACGGG CACCGCAAGT GCGAGGTCGT GCTCGACCCG GCCGAGACCA AGGCCCTCGA GGGCCGCTGC CCGAGCTGCG GCAAGCCGCT AACCGTGGGC GTGATGCATC GGGTGCAGGA CCTGGCCGAC CGACCGCTGG GCTATCGCCC CGCCGACGCG CCCGATTTCC GCAGCTTCGT CCCGTTGTCC GAAATCGTCG CCGAGATCGT GGGCGCCGGG GTCAACACCA AGGCCGTGGG ACGCGCGTAC GAGAGCCTGC TGGCGCGACT GGGCTCGGAG CTGTTCATCC TCGAGCACGC GCCGATCGAG GATCTGCGGC GCGGCGGCCA CGGGCAGCTC GGCAGCCGTC TGGCCGAGGC CGTGACCCGC ATGCGCGAGG GCCGCGTGAT CCGGCAGGCG GGCTACGACG GCGAGTACGG CGTGATCCGG CTGTTCGAGG CGCGCGAGCT GCGCCGCCCG GCGGCCGTGA GCCTGGCCCT GGCGCTGCCC GAGCCGCCCG CGGCTGAGGC TTCCGCTCCG GCTCCGGAGC CGGTCCCGGC GTCGCCCGCG TCCGTGGCTT CCGCGCCCGG TACCGCTGCG GAGTTTGATC CACCCCCGTC CGAAATCCCG CGGCCCTCGC CCGAAACCCT GCGCGACGGC GCGGCGAGTT CGCTGCTGTC TGCGCTCGAT CCCGAGCAGC GCCGGGCGGC CGAGTGCGTG CACGGTCCGC TGCTGATCGT CGCCGGGCCA GGCACGGGCA AGACCCGCAC GCTCACGCAT CGCATCGCCC ACCTGGTCGA AGACATCGGC GTCGAGCCCG CCGCGTGCCT GGCCATCACT TTCACCAATC GCGCCGCCGG TGAGCTGCGC GAGCGCCTCG ACGCGCTGTT GCCGGGCGCG GGCGCGGGCG TCGCCGTGCA CACCTTCCAC AGCCTGGCGC TGCGCATCCT GCGCGAGAAC CGCGTGCGCG CCGGTCTGCA TCGCGGTTTT CGCGTCGCCG CCGAGAGCGA GTGTGTGGCG CTCCTGGCCG ATGCCCTGGG CTGTTTGCCG GCCAAGGCGC GCAGCGTGCT CGCCCGGCTG CGGCGCGCGA GCGTGGCTGC GAGTGTCGCG GCGGGCGCGG GCCAGGGGGC GGCCGAGCAG CCGCCGGAGG CGAGCGCAGA GTCACTCGAT GACGAGCTGG CGCGCGCGCA CCGCGTCTAC CGCCAGGCGC TGGAGGAGGC CGCGCGTCTC GACTTCGACG AGCTGCTGGG CCGCGCCGAA GCGCTGCTGC GCGAGGACGA CATCGGCCTG GCCTACCGCG CGCGTTTTCG CCACCTGTCC ATCGACGAGT ATCAGGACAT CGACGCCCAG CAGTATCGGC TCATCGCTTT GCTCAGCGGC GACGTCGGCG CGGCCGGCAT GCGCGACGGT GGCCAGGACG AGGCTGGCGG CTCGCGCAGC CTGTGCGCGA TCGGCGACCC CGACCAGGCC ATCTACGGCT TCCGCGGCGC CGACGTCGGC TTCTTCCTGC GCTTCCGCGA GGAGTATCCG CGCACCCGCG AGGTCCAGCT CACGCGCAAC TACCGCTCTA CGGCGACCAT CGTCGACGCG GCGCTGCAGG CCATCGCGCC GCACTCGCTG GTCGCCGAGC GCGTGCTCGA GGCCGCCGAT GCCGGCGAGG GCGCGGCTTC GCTGCCCGTG CACGTGGTGT CCGCGGCCAG CGCGCGCGCC GAGGCCGAGA CCGTCGTGCA CAGCATCGAG GCCCTGATCG GCGGCACCAG CTTCTTCTCG ATGGATAGCG GACGCCTGGA CGACATCGGC GTCGGCGTCG GCGTCGGCGC GGCGCCCGGC GAGCGAGGCG CCGCGCCGAC CGAGAACGAC GAGAGCGACG ACCTGTCGTT TTCGGACTTC GCCGTCCTGT ACCGCACCGA CGCCCAGAGC GGGCTGCTGT GCGAGGCGCT GGCGCGCTCG GGCATTCCCT TTCAGAAGCG CTCGCACCAC CGCCTGGGCG ACGATCCCTT GACCGTGGCC CTGCTCGGCG AGATGCGCGA CGCGACGGCC GCGGCCGCGG CCGAGGACGC AGAGTCGCCA CCGCCGGGCG CGCTGCAGGC GTTTCTCGAC GCGGCCTCGA TCCGCCTGCG CGCGCGTCTG GAGACGGCCG TGGCAGCCGG CCCAACGCCC GACGCGACCG CAGCCGAGGC GACAACCTCT GCGGTGACAG GCGATCCGGC GCTCGACCCG GCGCGCATCG CGGCCGTGGC CGATCTGCTC CGGCCGCTGG CCGCGCGCTG CGACGATCTC GATAGCTTTG CCAACGAGCT GGCGCTGGAA GCCGAGGTCG ATCTCTGGGA TGCGCGCGCC GATCGCGTCT CGCTGCTGAC CCTGCACGCG GCCAAGGGTC TGGAGTTTCG CGTGGTGTTC CTGGTCGGCT GCGAGGACGG CGTGTTGCCG CTGCGCTGGG GCAGCGGCCG GGCCGAGGAC CTCGGCGAGG AGCGGCGGCT GTTCTTCGTC GGCATGACCC GCGCGCGCCA GCGTCTGTAC CTGCTGCACG CGCGCAAGCG GCGCTGGCGC GGCGAGCTGT GCGAGCTGCC GGTGTCGCCC TTCGTGCGCG ACATCGAGGA TCAGCTCTTG GCCCGGGGCT CGTCGCGGCC GCGCAAGAAG CCGGTGGTGC TGCACGAGCA GCTCGGCCTG TTCTAA
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Protein sequence | MDVPTAKTSF FADLHTHSKY ARATSKLSDL EHLAYWGAKK GISVVGTGDF THPAWRGELR DKLVPAEPGL FRLREDIERE VRARLDVPVR GLPRFLLSVE ISTIYKKGDK TRKVHHLIYA PDFDSVDRMV ESLAKIGNLR ADGRPILGLD SRHLLEIALS AGEGCYLVPA HVWTPWFAVL GSKSGFDAVA DCYGDLAEHI FAVETGLSSD PPMNWCLSSL DRYTLVSNSD AHSPPKLGRE ANVFTCDMDY FAMRRALETR EGFAGTVEFF PEEGKYHLDG HRKCEVVLDP AETKALEGRC PSCGKPLTVG VMHRVQDLAD RPLGYRPADA PDFRSFVPLS EIVAEIVGAG VNTKAVGRAY ESLLARLGSE LFILEHAPIE DLRRGGHGQL GSRLAEAVTR MREGRVIRQA GYDGEYGVIR LFEARELRRP AAVSLALALP EPPAAEASAP APEPVPASPA SVASAPGTAA EFDPPPSEIP RPSPETLRDG AASSLLSALD PEQRRAAECV HGPLLIVAGP GTGKTRTLTH RIAHLVEDIG VEPAACLAIT FTNRAAGELR ERLDALLPGA GAGVAVHTFH SLALRILREN RVRAGLHRGF RVAAESECVA LLADALGCLP AKARSVLARL RRASVAASVA AGAGQGAAEQ PPEASAESLD DELARAHRVY RQALEEAARL DFDELLGRAE ALLREDDIGL AYRARFRHLS IDEYQDIDAQ QYRLIALLSG DVGAAGMRDG GQDEAGGSRS LCAIGDPDQA IYGFRGADVG FFLRFREEYP RTREVQLTRN YRSTATIVDA ALQAIAPHSL VAERVLEAAD AGEGAASLPV HVVSAASARA EAETVVHSIE ALIGGTSFFS MDSGRLDDIG VGVGVGAAPG ERGAAPTEND ESDDLSFSDF AVLYRTDAQS GLLCEALARS GIPFQKRSHH RLGDDPLTVA LLGEMRDATA AAAAEDAESP PPGALQAFLD AASIRLRARL ETAVAAGPTP DATAAEATTS AVTGDPALDP ARIAAVADLL RPLAARCDDL DSFANELALE AEVDLWDARA DRVSLLTLHA AKGLEFRVVF LVGCEDGVLP LRWGSGRAED LGEERRLFFV GMTRARQRLY LLHARKRRWR GELCELPVSP FVRDIEDQLL ARGSSRPRKK PVVLHEQLGL F
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