| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hoch_0100 |
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| Symbol | |
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| ID | 8542471 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Haliangium ochraceum DSM 14365 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013440 |
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| Strand | - |
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| Start bp | 152984 |
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| End bp | 155392 |
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| Gene Length | 2409 bp |
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| Protein Length | 802 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 646384888 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_003264634 |
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| Protein GI | 262193425 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
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| TIGRFAM ID | [TIGR02100] glycogen debranching enzyme GlgX |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 32 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCTTACTC GCCGAACGAC TTTCCCCGGC CTGTGCAAGA CGCTCTCAGC GGTCTTGGTC
GCCGGCCTGG CCGGCAGCGG CTGCGTTGCC GAGGACCTCG ACCAGCTCGA CTACGACCCC
ATCACAGAGG AGCAGGAGCA GGAACAGGAG CCCGAGCAGG GGCTCGACAA GGCCGGCCCG
TCCTCGCTCG GGCTCGGCGC GCACTACTCG GCCGCGGGCG ACAAGGTCGA TTTCCGGGTG
TTCTCCTCGC GGGCCACGCG CATCGAGGTG CACGTGTACA GCGAGGCCTT TGGCGAGGAC
GCGGTGGCCG CGTATCTGAT GACCAAGAAC TCGTCCACCA AGGTGTGGTC GGCGAGCGTG
TCCACCAGCG AGCTGGCGAG CCTGGGTATC TCCGGACACG TGTACTACGG CTACCGCGCC
TGGGGCCCCA ACTGGCCGTA CACCAGCTCC TGGAGCGAGG GCTCGAGCGC CGGCTTCATC
ACCGACGTCG ACAGCCAGGG CAACCGCTTC AACCCCAACA AGCTGCTCAC AGATCCCTAC
GCGCTCGAGC TGAGCCACGA TCCCGCGACG CCGCTCAACC CCGACGAGAC CATCTACGCC
TCGGGTCCGA GCTACCGGCA CATCGACAGC GGCCCCGAGG GCTCCAAGAG CGTGGCCTTC
CCCGAGGACA ACACCAGCGT CGGCACCCGG CCCACGCGCG CCTTCAAAGA CGACATCGTC
TATGAGGTCA ACGTCCGCGG CCTCACCAAG CAGGACAGCT CGATCCCGGC CGCCTACCGC
GGCACCTACA AGGGCGCGGG CCTCAAGGCC GCCGCGCTCA AGAATCTCGG CATCACGGCG
GTCGAGTTTC TACCCGTGCA CGAGACGCTC AACGACGTCA ACGACGTCAC CCCCAACAGC
ACGGCCGGCG ACAACTACTG GGGGTACATG ACGATCAACT TCTTCGCCCC GGATCGCCGC
TACGCCTACG ATCAATCGCC CGGCGGCCCC ACGCGCGAGT TCAAGCAGAT GGTCAAGGCC
TTCCACGATC AAGGCATCAA GGTCATGATC GACGTGGTCT ACAACCACAC CGCCGAGGGT
GGCCCCTTCG CCGCCGACAA CCCCGAGACC GCCAAGCTGT TCAACTACCG CGGCCTCGAT
AACCCCACCT ATTACAGCCT CACCGCGGAC CGGAAGTTCA ACTACGACAA CACCGGCGTC
GGCGGCAACT TCAACACCTT CAACCCGGTC GCCCAGGACC TGATCATCGA CTCGCTGCGC
TACTGGTACG AGGAGATGGG CGTGGACGGC TACCGCTTCG ACCTCGCCTC GGTGCTCGGC
AACACCTGCG AGCACGAGTG CTTCAACTAC AGCAAGACCA ACCCGGGCAC CGCGCTCAAC
GGCATCTGGA ATGAGCTCAA CCCGCGGCCG GCCGCCGGCG GCGCAGGCGT GGACCTGGTC
GCCGAGCCCT GGGCCATCGG CGGCAACTCC TACCAGGTCG GCAACTTCCC CTCGGGCTGG
ATCGAGTGGG GCGCGTCGTT CCGCGACAGC CTGCGCAAGG ACCAGAACGA GCTCGGCGTC
GAGAGCGTGA CCCCGGGCGA GCTGGCCACG CGCTTCGCCG GCTCCTCGGA CAAGTTCGGC
GACGACGGCC GCAAGCCGTG GAACTCGGTC AACTTCATGG TCGCCCACGA CGGCATGTCG
CTGCGCGACC TGTACGCCTG CAACAGCAAG AACAACAACC AGCCCTGGCC CTACGGCCCC
TCGGACGGCG GTGAGGACCA CAACCGGAGC TGGGACCAGG GCGGCAACGC GGCCCAGCAG
CGGCGCGCGG CCCGCAACGG CATGGCCTTC ATGATGCTCA GCGCCGGCGT CCCCATGATC
ACGGGCGGCG ACGAGTTTTT GCGCACGCAG TTCTGCAACA ACAACGTCTA CAACCTCGAC
TCCGAGAAGA ACTGGCTCAA CTACAACCTC GACACCAACG CCCAGAACTT CCGCACCTTC
ACCCAGCGCC TGATGGCCTT CCGCAAGGCC CACCCGGCGC TGCGCCCGCA GAACTTCTAC
AGCGGCGCGG ACGGCAACGG CAACGTCATG GAGCAGCTGC GCTGGTTCCA GCCCAATGGC
GCCCAGGCCA GCGGCGCGTA CATGGACAAC GCCCAGAACC ACGCCATCGC CTGGCGCCTC
GACGGCACCG AGCTGGGCGA TTCGGCCAAG GCCATCTACG TGGCCTACAA CGGCTGGCAG
AGCGCGGTGG ACTTCAAGCT GCCGTGGACC GGGCAGCAGG CCAGCAACTG GTACCGCGTA
CTCGACACCT GCGACTGGGC CGAGGGCCCC AACCAGGTGC GCCAGCCCGG CAGTTACGAC
TTCATCGGCG GCGAGAACAC CAACTACCAG GTGTGCGGAC GCGGCCTGAT CGTGCTGGTC
GCGCAGTAA
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| Protein sequence | MLTRRTTFPG LCKTLSAVLV AGLAGSGCVA EDLDQLDYDP ITEEQEQEQE PEQGLDKAGP
SSLGLGAHYS AAGDKVDFRV FSSRATRIEV HVYSEAFGED AVAAYLMTKN SSTKVWSASV
STSELASLGI SGHVYYGYRA WGPNWPYTSS WSEGSSAGFI TDVDSQGNRF NPNKLLTDPY
ALELSHDPAT PLNPDETIYA SGPSYRHIDS GPEGSKSVAF PEDNTSVGTR PTRAFKDDIV
YEVNVRGLTK QDSSIPAAYR GTYKGAGLKA AALKNLGITA VEFLPVHETL NDVNDVTPNS
TAGDNYWGYM TINFFAPDRR YAYDQSPGGP TREFKQMVKA FHDQGIKVMI DVVYNHTAEG
GPFAADNPET AKLFNYRGLD NPTYYSLTAD RKFNYDNTGV GGNFNTFNPV AQDLIIDSLR
YWYEEMGVDG YRFDLASVLG NTCEHECFNY SKTNPGTALN GIWNELNPRP AAGGAGVDLV
AEPWAIGGNS YQVGNFPSGW IEWGASFRDS LRKDQNELGV ESVTPGELAT RFAGSSDKFG
DDGRKPWNSV NFMVAHDGMS LRDLYACNSK NNNQPWPYGP SDGGEDHNRS WDQGGNAAQQ
RRAARNGMAF MMLSAGVPMI TGGDEFLRTQ FCNNNVYNLD SEKNWLNYNL DTNAQNFRTF
TQRLMAFRKA HPALRPQNFY SGADGNGNVM EQLRWFQPNG AQASGAYMDN AQNHAIAWRL
DGTELGDSAK AIYVAYNGWQ SAVDFKLPWT GQQASNWYRV LDTCDWAEGP NQVRQPGSYD
FIGGENTNYQ VCGRGLIVLV AQ
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