| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_2115 |
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| Symbol | |
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| ID | 8535274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | - |
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| Start bp | 2267473 |
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| End bp | 2272557 |
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| Gene Length | 5085 bp |
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| Protein Length | 1694 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 646384492 |
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| Product | outer membrane autotransporter barrel domain protein |
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| Protein accession | YP_003263979 |
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| Protein GI | 261856696 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0846995 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCGTA TTTATCGTCT TGTTCGTCAT CGTACCACCG GCAAGATCCG GGTGGTTTCT
GAATTGGCCC GTGGGGCAGG GAAATCAGGC CGATCCCGTG TGGATAATCC TGCCTCATCC
CACGTCTCGA CGCGCGTCAC TACAAGCGTC TTCCAGGGCA TGCTGCTTTT GGGAGCGTTG
CTGCTCAGTG TGAATGCGCT GGCGGCCACG GGCACGGCGG GCGGCGATGG CGGCTCACCG
CAGGATGCCA GTCTGCTGGG CGCGCAGGGT ACGGGCAGTA ACAGCCCCAC CAATGATGGT
GGCTATGGCG GTTGCGCCAC CTGCGGCCAG ACCAATGGCA CGGCCGGTTC GGGCGGCAGT
GGTAGTGGCG GCGGCGCTGG GACGACGACA CCCACCGCGG GCGGTTCAGG CAATACGGGC
GGTGGTTCGG GTGGTGGTGG GTTATATGGT GGCGCAGGCG GCGGCGGGGG TAGCCTCGAG
ACGCAAGGTG TGGGCGGTGG CGGTGGCGGT GGGATCGCTG GTTCGAGCTA TTCCGGCGGC
GGCGGTGGTG GTGGCGGTGG CGTCGGCACA TCCTGGACTG CAGGTGGTAG CGCGACGACG
ATCAGCGGAA GCTACACCGG TGGCAAGGGT GGAAATGGTG GATCGGGCGG TGGAGGTACG
CTGTTTGTCG GTCATGGCTA TTCCGGCGGT GGCGGCGGTG GCGGTGCGGG CTTTTATGTC
GACTCCGGCA ATAATGCCAC CTTCAGCGGG ACGCTTACCG GCGGGGCGGG CGGTAATGCT
TATTTCAACC CGAACGACAA TAGCTATGGC GGCGGTGGTG GTGGCGGGGC TGGCTTGGTG
ATTGGCGATA CCAATACCAC AGTGCTGGCC GCTGGCGGCG CGGTTAACGG CGGAACGGGC
GGTGGCGGCA ATAAAGCGGG CAACGGCGGC GCGGGCATCG TGCTCGGCAC CGGTAATACC
TTGACTATCG ACCAGAATGC CAGTGTCTCG GGCGGTACCG GCGGCACGGG GGCGTTCGCC
GGGCAGGGTG GCGTGGGCAT TATCGCCACC GGCAGCAGTT TGATTGATGT CAAAGGCTCC
GTTTCTGGTG GTTTGTCCGG TTCGGGCTCG GGAGCAAGCG GCGACCCGGC CGATGCCATT
GATCTCAGCG GCGGTGGCAA TACAGTGCAA CTGGATACCA CGGCGCAGGT TACCGGCAAG
ATCGTCAGTA GCAGCGGTAC GACCAACGGC GGCGACACTT TGTTGCTGAC CGGTGGCGGC
GGCACGATCG GTGCCGATCA GCTCGTGGGT TTTGGCACCT ATGCAGCCAA TAGCGGTTCG
TGGACGCTCA CCGGCACCGG CGATGCCAGC CAGAACTGGG CCCTGTCCGG TGGCGCGACG
GGCTTGATCG GCACCACCCA AAGCCTGGTC GGTAATATCG ATATGGGCAG CGGCAGTTAT
GTGTCGTTCC TGAATAATCC CAGCGGCACC TATGGCGGCG TGCTGAGCGG TGCGGGTGAT
GTGTCGATCA ATGGCGGCAG CGTGGCCTTT GCGGGTCAGA ACACCTATTC CGGCGCTACC
GTGTTGAGCA ATGGGGCGAC GCTGGCGCTC ACCGGCAATG GCGTGCTGGG AAACAATACC
TATGTGAGCA TGGGCGGTGG CTCGGTGCTG GATTTATCGG CCTCGAATCT GGCGCAGAAC
AGCGATACGC AAAATCTGGA CGATCTGGCG GGCGATGCAG GCAGTGTGGT GCATCTGGGC
AGTGGCCGCA TCAACATCAC CGGCGCAGGC GGACAGGTAT TCAATGGCAT GATCGACGGT
ACGGGCGCGG CCTTGTTTAC GGTGTCGGGC GGTCAATGGG GCTTGGGCGG CACGGTGACG
ACCGGTTTGC CGTTTGTCAT TCAGGGCGGC GCTCAGGTGA ATATTTATGG GGATGGCACC
ATCACCAACG GCGTAATCGT GAATGGCATG CTCTCTTTGG GAAACACAAA CCAAGGCTTC
ACGACCCGTT TTTTACAGGG CAGCGGCATG GTGGCGCTGA GTGACAAAAG CCTGACGCTG
ACCGATGGCG GCGACTCGAC TTTTTACGGG CAGGTCACCG GCGGCGCGGG CAGTACGCTG
CATTTAACCG GCGGCACGCA GATCTTCACT CGCGATGTGG GCTTTCAATT TTTCAGCGGT
AAAACGCTGA TCGACCCCGG TGCCAATCTG CTGCTGAATC TGGCGGCGAC CATGCCCAAA
TCCGATGTCA CGGTCAATGG TACGCTGACG GTGGCAGGTC CTGGCCCATC GACCGCGGAG
GTACGCACGC TCAACGGCGA TGGAGTGGTT AACATCACCG GATCACGCGC CTTGCAGATC
GACGATCAGG GCGGCGTGTT CTCCGGCGCG ATCACCAATG CGACCAATAC CACTGGCAAC
CTCGTGATTG CGTCCAGCGC GGCGCAGACG TTATCGGGGG TGAATACCTA TAACGGCACC
ACCACGTTAA GAGGCGCTTC CACGCTCACG CTGTCGGGCG CCGGTTCGAT TGCCGATTCT
GCCAATGTCA TCATCAATAC CCTGAGTTTG CTGGATCTTT CCGGCACCAC GGCTGGTACC
ACGATTCAGC AAGTGCAAGG TTCTGGCAAT ATCCAGTTGG GCGATCAGAC GCTGACGCTC
AGCAACCCCA ATGCCAATGA CATGTCTTTC GATGGGCAGA TTCTGGGCGC GTTCGGTGGG
CTGCATCTGC AAAACGGCAA ATTGACCCTG TCGCTGCCGG GAACCTACCA CGGCGATACT
GTAATCGACC CGACGGCGAC GCTGGCCTTG AGTGGTCAGG GTTCATTGGC TAACAGTACG
GTCGTCGTCA ATGGCACGCT GGATGGCACG GCCACCAATC TGGTTAATCC ATCGAACAAT
AATTATGTGG TGGTCGGCGG GCTATCGGGG GATGGCGTAG TCAACCTCAC GCAACCGAAC
TCGCTGCAAA TCAACAACGC CCAAGACAGT GTGTTTTCCG GGCAGTTGAA TTTTGGCTCC
GGCACGCCGG GGATGTTGGG TTTTCTGGTG ATGCAAGGCG GCACGCAAAC CTTCGATAGT
GCCATTTCAT TGCCAATCGC TGCGCTCATC CAGCAAAACG CCACGCTCAA GTTCGGTAGC
AATGGTTCAT TGAGTTTGCC AGCGCAAGGT GGCCTGTATA ACGATGGCAC TCTGGATTTC
AGCGCCAGTT CTGCCACGCA AACCACCGGC ACCATCGGTG GTCTGGGGGC GATGATTCTG
GGCAGCGGTG GCCTGTCGCT CACGGGTGAT AACAGCGAAT ACACCGGGGT GATTAGCGGC
AGTGGCGGTA TTAACCTGAC CACCGGTACC TTGGTGTTTG ACGGGGCCAA TACCTATTCG
GGTAACACCG TGGTTGCCAC GGGCGCATCG CTGCTGCTGA ACAATCAAGG CAGTCTTGCC
AATTCTCAGG TGAAAAATGA CGGCGTGGTT GATTTAAGTG CGGCCACGAT CAATCCGACC
GTGGCGGGAA TCAGTGGCAG CGGTGCGCTC AAGCTGGGCA GTAACACGCT GCATCTGGCG
AATGCACAAG GCGTATTTGA TGGTGCCCTG AGTGGTAGCG GCACGCTGAG CATGGATGGC
GGTTCGTGGA TATACAACAC CACTGCGGCA CAGGCCAGCG GATTCACGGG GGCAACGAAC
ATCACTGGCG GCCAGATGAT GGTCGGTGAT GAACAACACA GTAGTGCCTT TCTCCCGGGT
GATGTGGCGG TTCAATCCGG CGCCACCCTG CGCGGTCACG GCACGATTGG CGGCAATGTG
CAGAACGATG GCACGGTGTT TCCGGGCGGT TCGGTTGGCA TTCTTACCGT TAATGGTAAT
TACACCCAAG GTGCCAACGG TGTGATGACG GCACAAGTGC TGCCCAGCAC GAATCCTGTG
GCGGGCGTCG ATTACGATCA ATTGCATGTG CTCGGCCAGG CCACGCTTGA CGGGGCACTG
GATGTCGTTG TCGATTCTGG TCAATATACC GTCGGCACGC AATACGACCT TATTAAAGCC
GATGGCGGTG TATCCGGGCA ATTTGCGCAG GTGGCCTACA ATCCGGCATT CGCCGCGTAC
ATCACGCCCA CCGTGCAATA TTCGGCCAAC ACAGCCAGCT TGAGACTTCT GCCAACGGCA
GCTCCGACTC CGACTCCGAC TCCGACTCAG GCACCAACCC CGGGCCTTGC GTACACCACG
GCAAATGCAG CGGTCGCACA GCCTTGGATT ACGCAGCACA GCCTGTTGTC CGTCGGCGAT
ACCCTTGCTG ACGCACCAAC TCATGGTCGC CATGTCTGGT TGCGGGCGCT CAAAGGCCAG
GGTGGAGCGA ATGCCGCCTC TGTCGATCAA AACGGAGTTG TGCTGGGTGC CTCGAAGGCG
GTTTCAGATG ACTGGTCTGC CGGTGTTGCC TTCGCCCAGA CCCGAACGCA AACTCAAACC
AGCTATCAAT CAGTACAAGG GGGTGGTTTG GGGCTGTATG CCTTGAGTGA GTTCAATCAA
GGCCCTTGGC GAATCGATGC CTCCGTCGGT GGGGGGCGAC TCACACAGGA CAGTACCCGC
CACCTCGATC CGACGGGGCT GGTGGCCTCG GGCGACACCC ACGGCTGGTA TGGTTCGGCC
GCTGTCACAG CAAAATACCG CCACCAAATA AACCAAAAAG GGTTTATCGA GCCCTATGCT
GGTGCGGCTT ATCTCTACAG CCATATTCAG GCATTTGAGG AAAGTGGAGC GGGTTTGCTG
AACTTGTCGT ACGCATCACG CGGAAGCAGT CTTGGGCGAT TCAGCACCGG GGTAAAGGCA
GGCGTGGATT TTGGCAATGC GGGCGGAATG CAGATTCGCC CCTGGGTTCT TGCCGGCGTT
AACGCCTACG CCGGTGACAC CCAGTCTACC CAGAATTTGT CGCTCGGCGT GCTCGATCAA
ACCTTGACCG CCCGGAGCGC TTCCCACACG GCACTAGCAA CCGGTGCAGG GGTAACCTTC
GAGAGTCCGC GGCATCAGTG GCGCACCACA TTGGCCTACG AGGGTGAACA TAGCCATGAC
AGCCACTTTA ACAGTGTGCA ACTGAAGGTT TCGTATCGCT GGTAA
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| Protein sequence | MNRIYRLVRH RTTGKIRVVS ELARGAGKSG RSRVDNPASS HVSTRVTTSV FQGMLLLGAL
LLSVNALAAT GTAGGDGGSP QDASLLGAQG TGSNSPTNDG GYGGCATCGQ TNGTAGSGGS
GSGGGAGTTT PTAGGSGNTG GGSGGGGLYG GAGGGGGSLE TQGVGGGGGG GIAGSSYSGG
GGGGGGGVGT SWTAGGSATT ISGSYTGGKG GNGGSGGGGT LFVGHGYSGG GGGGGAGFYV
DSGNNATFSG TLTGGAGGNA YFNPNDNSYG GGGGGGAGLV IGDTNTTVLA AGGAVNGGTG
GGGNKAGNGG AGIVLGTGNT LTIDQNASVS GGTGGTGAFA GQGGVGIIAT GSSLIDVKGS
VSGGLSGSGS GASGDPADAI DLSGGGNTVQ LDTTAQVTGK IVSSSGTTNG GDTLLLTGGG
GTIGADQLVG FGTYAANSGS WTLTGTGDAS QNWALSGGAT GLIGTTQSLV GNIDMGSGSY
VSFLNNPSGT YGGVLSGAGD VSINGGSVAF AGQNTYSGAT VLSNGATLAL TGNGVLGNNT
YVSMGGGSVL DLSASNLAQN SDTQNLDDLA GDAGSVVHLG SGRINITGAG GQVFNGMIDG
TGAALFTVSG GQWGLGGTVT TGLPFVIQGG AQVNIYGDGT ITNGVIVNGM LSLGNTNQGF
TTRFLQGSGM VALSDKSLTL TDGGDSTFYG QVTGGAGSTL HLTGGTQIFT RDVGFQFFSG
KTLIDPGANL LLNLAATMPK SDVTVNGTLT VAGPGPSTAE VRTLNGDGVV NITGSRALQI
DDQGGVFSGA ITNATNTTGN LVIASSAAQT LSGVNTYNGT TTLRGASTLT LSGAGSIADS
ANVIINTLSL LDLSGTTAGT TIQQVQGSGN IQLGDQTLTL SNPNANDMSF DGQILGAFGG
LHLQNGKLTL SLPGTYHGDT VIDPTATLAL SGQGSLANST VVVNGTLDGT ATNLVNPSNN
NYVVVGGLSG DGVVNLTQPN SLQINNAQDS VFSGQLNFGS GTPGMLGFLV MQGGTQTFDS
AISLPIAALI QQNATLKFGS NGSLSLPAQG GLYNDGTLDF SASSATQTTG TIGGLGAMIL
GSGGLSLTGD NSEYTGVISG SGGINLTTGT LVFDGANTYS GNTVVATGAS LLLNNQGSLA
NSQVKNDGVV DLSAATINPT VAGISGSGAL KLGSNTLHLA NAQGVFDGAL SGSGTLSMDG
GSWIYNTTAA QASGFTGATN ITGGQMMVGD EQHSSAFLPG DVAVQSGATL RGHGTIGGNV
QNDGTVFPGG SVGILTVNGN YTQGANGVMT AQVLPSTNPV AGVDYDQLHV LGQATLDGAL
DVVVDSGQYT VGTQYDLIKA DGGVSGQFAQ VAYNPAFAAY ITPTVQYSAN TASLRLLPTA
APTPTPTPTQ APTPGLAYTT ANAAVAQPWI TQHSLLSVGD TLADAPTHGR HVWLRALKGQ
GGANAASVDQ NGVVLGASKA VSDDWSAGVA FAQTRTQTQT SYQSVQGGGL GLYALSEFNQ
GPWRIDASVG GGRLTQDSTR HLDPTGLVAS GDTHGWYGSA AVTAKYRHQI NQKGFIEPYA
GAAYLYSHIQ AFEESGAGLL NLSYASRGSS LGRFSTGVKA GVDFGNAGGM QIRPWVLAGV
NAYAGDTQST QNLSLGVLDQ TLTARSASHT ALATGAGVTF ESPRHQWRTT LAYEGEHSHD
SHFNSVQLKV SYRW
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