Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Hneap_1165 |
Symbol | |
ID | 8534317 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Halothiobacillus neapolitanus c2 |
Kingdom | Bacteria |
Replicon accession | NC_013422 |
Strand | + |
Start bp | 1269257 |
End bp | 1270981 |
Gene Length | 1725 bp |
Protein Length | 574 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 646383554 |
Product | Tetratricopeptide TPR_2 repeat protein |
Protein accession | YP_003263048 |
Protein GI | 261855765 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.96712 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCTCTG CCGATGCGCC AAAACCATCG AATGCGGTTA CGAATATTCC CCTGCCGTCG TCCGCTCAGG AGCAGGCTCG ATTAAAAGAA ATTGACCGGA ATCCGGTTTT TTTGATCATG GCCGGTGAGT TGGCAGGTCA GGCAAACAAT CTGCCTCAAT CTGCCGATTA TTATTATGAG GCGGCTGAGC AAACAGATGA ATTATCCGTT ATTCGACGAG CAAGCCAGAT CGCCTTGATC GCCAAAAAGT ACGACTTGGC GCAAAGCATG GCTAAACGCT GGATAGCCCT GGAGCCCAAG TCCATCAAGG CTGCGGCCAC CTTGACAGTC TCTGCGATCC AACTTGGCGA TATTCCAGCG GCAGATGAGG CACTGGAAAA CTGGCTTAAG CAGATCAATC ACGATGATCC AGCCGTTTTT AACGAGCTTG GCGCCTATCT TGAAAACAAC GTGGCCAGAG ATAAAGCAAT CACCTATATC GATCATCTGG CAAAACGCTA CCCGAATAAT TTCACCGCCC AGATCGTGGT TGCCAAACTC GACCTTAAAT TCGACCGTTT GGAAACGGCG ACCAATGCCG CCAGTCGTGC CGTTGAAATA GCGCCGAATA GCCAAACCGC ACGCGACATC CTCATCGTTG CGCTGAGTCA GTCCGGCAAC AACAAAGCGC TTTTGAAGGC ATTGAAATCA GCGCACAAAC GCTTTCCGGG TACGCCGCGC TATCTTTCTG GTTTGATCGA GTCAACCATT CGCGAAGGCA ATCAAATTGA GGCGGGCAAG CTCATTGTTA CGGCTCTTGG AAAACCACAA GATGATCCGA CCCAATTACG TAATCTGGCT GTGCTGTCTC TTCAGATCAA CCGGCCAGCA CTTGCAAAAA AAGCTTTGCT TAAACTGAAT CAACTACCCG ATCAACATGA TCTTGCCCAA CTGCTGCTCG GCCGCCTCGC CGCGCAGTCT GATGACTTCC AACAAGCCAT CCGTCACTTC AACAACGTAG CGATAAACAG CGAACACTAT GCCCAAGCGC GAATTCTAAT GGCAGCCGCG TACGCTCAAT CTGACGACAT GACCGGTGCG CTGCAGAGTC TGGATATTGC CCTGAGCCGT CCTATTGACG AGGCCGACAA GCAGCGTCTT ACTCTGGCAA AAGCAGGTTT GCTGCAATCT CAAGGGCTTG ATCACGAAGC ACTAACCACG CTCAACGAAG CGGTCACGAT TTGGCCCAAC GCCCACGATC TTCAGTTGCA GCGCGCCATG ATTCTGTTGA AATTCAACCG AAGCATTGAG GCGGAAGAAG TCCTTCGGCA AGTCATAAAA GAAGATCCGG AGAATGCGAC AGCACTCAAT GCGCTGGGTT ACACGCTTGC CGATGAAAAC CGCGACCTGA ACGAAGCAGA AAAAATGATT CGAAAGGCAC TGGCAAGTGA TCCTGAAAAT GCGGCCTACC TTGATAGTCT CGGCTGGGTG CAATATCGAT TGGGACAATT CGAGGAGGCA GAGAAGACGC TCCAACAGGC ATACAAACTT GTCCCCGACC CTGAAGTTGG CGCGCATTGG GGTACCGTGC TTTGGCACCT TGATAAACAC GAAGAGGCCA AAGCAGTCTG GAAACGCGCA CTACTGCTAC GCGGTGATCA CCCTGTACTG ACGCAAACGC TACAGAAATA CGCCCCAGAC CTCATGAACG ACACAGAGAC ACCGCAGAAT CAAAATCAAC CATGA
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Protein sequence | MTSADAPKPS NAVTNIPLPS SAQEQARLKE IDRNPVFLIM AGELAGQANN LPQSADYYYE AAEQTDELSV IRRASQIALI AKKYDLAQSM AKRWIALEPK SIKAAATLTV SAIQLGDIPA ADEALENWLK QINHDDPAVF NELGAYLENN VARDKAITYI DHLAKRYPNN FTAQIVVAKL DLKFDRLETA TNAASRAVEI APNSQTARDI LIVALSQSGN NKALLKALKS AHKRFPGTPR YLSGLIESTI REGNQIEAGK LIVTALGKPQ DDPTQLRNLA VLSLQINRPA LAKKALLKLN QLPDQHDLAQ LLLGRLAAQS DDFQQAIRHF NNVAINSEHY AQARILMAAA YAQSDDMTGA LQSLDIALSR PIDEADKQRL TLAKAGLLQS QGLDHEALTT LNEAVTIWPN AHDLQLQRAM ILLKFNRSIE AEEVLRQVIK EDPENATALN ALGYTLADEN RDLNEAEKMI RKALASDPEN AAYLDSLGWV QYRLGQFEEA EKTLQQAYKL VPDPEVGAHW GTVLWHLDKH EEAKAVWKRA LLLRGDHPVL TQTLQKYAPD LMNDTETPQN QNQP
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