| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hneap_0316 |
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| Symbol | |
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| ID | 8533436 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halothiobacillus neapolitanus c2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013422 |
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| Strand | + |
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| Start bp | 324553 |
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| End bp | 328719 |
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| Gene Length | 4167 bp |
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| Protein Length | 1388 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 646382699 |
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| Product | DNA-directed RNA polymerase, beta subunit |
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| Protein accession | YP_003262226 |
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| Protein GI | 261854943 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.376898 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTATT CATTTACTGA AAAGAAGCGA ATCCGCAAGG AATTTGGCCA CCGTGCCGAT
ATCCTGCCGG TACCGTATTT ACTGGCGACT CAGGTTGAGT CTTATAAGTC ATTCTTGCAG
AGTGGTGTTC CTGCCAAAGG GCGGACGAAT GCCGGACTGC ATGCCGCGTT AAGTTCTGTT
TTCCCGATCC GCAGTCATTC AGGTAATGCT GAAATTGCGT ACGTGGATTA CTACTTTGGC
GAACCGGCTT TCGATGTTCG CGAATGCCAG ATTCGTGGTT TGAGCTATGG TGCACCCTTG
CGCGTGAAGA TGCGTCTGGT CATTTACGAT CGTGATGCAC CGGCTGGCTC CAAGGTCGTC
AAGGATATTC GTGAGCAGGA TGTCTATCTG GGCGAAATTC CATTGATGAC CGAGAGCGGT
ACGTTTGTCA TCAACGGTAC CGAGCGGGTT ATCGTGTCTC AGTTGCACCG TTCGCCCGGT
GTGTTCTTTG ATCACGACAA GGGTAAAACC TCAAGTTCCA AGAAAATCCT CTTTTCTGCG
CGGATCATCC CCTACCGTGG TTCGTGGCTA GATTTCGAAT TCGACCAGAA GGATATTCTG
TACGCGCGTA TTGACCGTCG CCGGAAGATT CCTGCGTCGA TCATCCTGCG TGCACTGGGT
TACACCAACC AGAACATGCT CGATATTTTC TTCGATCACG ATGAGTTCCA TATCGATAAA
GACGGTGGTC TGGCTCTGAC GCTGGTCGCT GACCGTCTGA AAGGTACCGA TGCGGCATTC
GACATCGATA TCAATGGTGA AAACCTGATC AAGACGGGCA AACGCATCAC CGCGCGTCAC
GTGCGCGAAT TGGTCGCCGC CAAGGTCACC AGCCTGCCGG TGCCTGTGGA TTTCGTTGTT
GGTCGTGTGC TTGCTTCGGA CGTGATTGAC ACGTCAACCG GTGAAGTGCT CGCACAAGGT
AATGAAGAGT TGACCACCGA GTTGGTGGCA AAACTTGCCA AGGCCGGAAT TACCCAGTTC
AAAACGCTCT ATTTCAATGA TGTTGATCGT GGGCCGTTCA TGTCGCTGAC ATTGCGCGCC
GATCCTTCGA CCACGCCTCT TGAAGCGATG GTCGAAATCT ACAAGATGAT GCGTCCGGGC
GAACCGCCGA CGAAAGATTC TGCCGAGGCG TTGTTCCATG GCCTGTTCTT TACGGAAGAT
CGTTACGATC TTTCCGAGGT GGGCCGGATG AAGTTCAATC GCCGCATCGA GCGCGAAGGC
GACGTCGGTC CTGGCGTTCT GTATGACGGC AAGTATTTTA CAACGCGCGC TGCGCAAGGC
GACGAGGCTG CCAAGCAATT GCTCAAGGAG CAGGGCGGCG TTTCAGACAT TCTTGATGTC
ATGAAGGAAC TGATCGATAT CCGTAACGGC AACGGCAAGA CAGATGACAT CGATCACCTG
GGTAACCGCC GTATCCGTTC CGTGGGCGAG ATGACGGAAA ACGTCTTCCG TATCGGTTTG
GTTCGTGTTG AACGCGCAGT CAAAGAGCGC CTCACGCAAG CCGAATCTGA AGGCCTGACA
CCGCAGGATC TGATCAATGC CAAGCCGGTG GCTGCTGCGA TCAAAGAGTT CTTCGGCTCC
AGCCAATTGT CCCAGTTCAT GGATCAGAAC AACCCGCTGT CGGAAATTAC GCACAAGCGT
CGTATTTCAG CATTGGGTCC GGGTGGTCTG ACTCGTGAGC GCGCGGGTTT TGAAGTGCGT
GACGTTCACA CCACGCACTA CGGTCGCGTG TGCCCAATCG AAACGCCGGA AGGCCCGAAC
ATCGGTCTGA TCAACTCATT GGCGACCTAT GCGCGTACCA ATGGCTATGG CTTCCTCGAA
ACACCTTACC GCACCGTCAA AGACGGCGTG GTCAGCAAGG AAGTCGATTG GTTGTCGGCC
TATGAGGAAG AAAAGTTCAC CATCGCTCAG GCTAACGCGC CGCTCGATGA CAACGGCGTT
CTGCAAGGCA ATCTGATCTC CGTCCGTCGC GCCGGTGAGT TCATGCTCGC CAGCCCTGAA
GAAATTCAGT ACATGGACGT ATCACCGAAG CAGATCGTGT CCATCGCGGC TTCCATCATT
CCGTTCCTCG AGCACGATGA TGCGAACCGC GCCTTGATGG GTTCGAACAT GCAGCGTCAG
GCAGTGCCTA CCCTGCGTGC TGATAAGCCG TTAGTCGGTA CGGGCATGGA GCGCGTTGTT
GCTACCGATT CCGGTTCGTG CGTCGTCGCA CGCCGTGGCG GTGTGGTCGA TCGTGTGGAT
GCAGCGCGTG TCGTGGTTCG GGTTAATGCC GAAGAGGCAA GCCAGGGCGA CGTGGGCGTA
GATATCTACA ACCTCACCAA ATATACCCGT TCGAACCAGA ACACCTGCAT CAACCAGACG
CCGTTGGTCA AAGCGGGTGA CGTGATTGCC AAGGGCGATG TGCTTGCTGA TGGTCCGTCG
GTCGACATGG GTGAACTGGC ACTGGGTCAG AACATCCTGT GTGCGTTCAT GCCGTGGAAC
GGTTACAACT TCGAGGATTC GATCCTGTTG TCCGAGCGCG TTGTGCGTGA AGATCGCCTG
ACCACCATCC ACGTGGAAGA GTTGAACTGT ATCGCGCGTG ACACCAAGTT GGGTGCCGAA
GAGATCACAG CTGATATCCC GAACGTGGCC GAAAGCCTGC TGAACAAACT GGATGCAGCC
GGTGTGGTCC ACGTCGGCGC GGAAGTCCGT CCGGGCGACA TCCTCGTAGG CAAGGTCACA
CCGAAAGGTG AGACCCAGCT CACGCCGGAA GAAAAACTTC TTCGTGCCAT CTTCGGTGAG
AAGGCCTCCG ATGTTAAAGA CACATCGTTG CGTGTTCCGC CGGGAATGGA AGGTACAGTT
ATCGATGTGC GTGTCTTCAC TCGCGACGGT ATCGAAAAAG ACAGCCGTGC GCGTGCGATT
GAAGAAGCCG ATCTCGAAGC CGTGCGCAAG GATCTGAAAG ACCGTATGCG GATCATCGAA
GGCGATATTC TCGCTCGTGT GAAATCCGTT CTGGTCAATC AGGTCGCCGT GGGCGGTCCT
GGCGTCAAAG CAGGTAGCAA GATCACGGCT GCTCAACTCG AGAAGATCGA GCCGAGCAAG
TGGCTGGAAA TTCGCGTTGA AGGCGAAGAA GCCGCTCAGG CGATGGAAGA GTACATCGCT
CAGTTGGCAC AGGCTCAAGT CGATATTGAC AAGCGCTTCG AAGACAAGAA GAAGAAAATT
CAGCAAGGCG ATGATCTGGC TCCTGGCGTG CTGAAGATGG TCAAGGTCTA TGTAGCCGTT
AAGCGTCGCA TCCAGCCGGG TGACAAGCTG GCCGGTCGTC ACGGTAACAA GGGTGTGGTC
TCCATGATCG TGCCTGAAGA AGACATGCCG TACATGGAAA ATGGCCAGCC GGTCGATATC
TGCCTCAACC CGTTGGGCGT ACCGTCGCGG ATGAACATCG GTCAGATTCT TGAAACCCAT
CTGGGCTTCG CGGCGCGCGG TCTGGGTGTG AAGATCGAAG AGATGCTGAA GCTGGAACGA
GCCAAGGCAT TGATCGAACT GCGTGCATTC CTCGATAAGG TATACAACTA CAAGTCTGAC
AAGCCTGTCG ATCTTGATGC ATTGAGTGAT GACGAGTTGA TCGAACTGGC GCGCAACCTC
AAGAAGGGCG TGCCGATGGC TACACCGGTC TTCGATGGTG CAGTTGAGGA CGAAATCAAG
TACATGCTGG AACTGGCTGG TTTGCCGACC TCGGGTCAGG TACAGCTCTA CGACGGCCGC
TCAGGCGAAC CGTTCGAGCG CACCACGACC GTGGGATACA TGTACATGCT CAAACTCAAC
CACTTGGTTG ACGACAAGAT GCATGCCCGT TCGACTGGTC CTTACTCACT TGTTACCCAG
CAGCCGCTGG GTGGTAAAGC GCAGTTCGGT GGTCAGCGCT TCGGGGAGAT GGAAGTCTGG
GCGCTGGAAG CCTATGGCGC AGCGTACACA CTCCAGGAAA TGCTCACCGT TAAGTCGGAT
GATGTGAACG GTCGTAACAA GATGTACAAG AACATCGTTG ACGGAGATCT CAAGATGGAT
GCCGGTATGC CGGAATCCTT CAACGTACTC CTCAAGGAGA TTCGTTCGCT CGCGATCAAC
GTCGAGCTGG AGCAGGGCAA AGAATAA
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| Protein sequence | MSYSFTEKKR IRKEFGHRAD ILPVPYLLAT QVESYKSFLQ SGVPAKGRTN AGLHAALSSV
FPIRSHSGNA EIAYVDYYFG EPAFDVRECQ IRGLSYGAPL RVKMRLVIYD RDAPAGSKVV
KDIREQDVYL GEIPLMTESG TFVINGTERV IVSQLHRSPG VFFDHDKGKT SSSKKILFSA
RIIPYRGSWL DFEFDQKDIL YARIDRRRKI PASIILRALG YTNQNMLDIF FDHDEFHIDK
DGGLALTLVA DRLKGTDAAF DIDINGENLI KTGKRITARH VRELVAAKVT SLPVPVDFVV
GRVLASDVID TSTGEVLAQG NEELTTELVA KLAKAGITQF KTLYFNDVDR GPFMSLTLRA
DPSTTPLEAM VEIYKMMRPG EPPTKDSAEA LFHGLFFTED RYDLSEVGRM KFNRRIEREG
DVGPGVLYDG KYFTTRAAQG DEAAKQLLKE QGGVSDILDV MKELIDIRNG NGKTDDIDHL
GNRRIRSVGE MTENVFRIGL VRVERAVKER LTQAESEGLT PQDLINAKPV AAAIKEFFGS
SQLSQFMDQN NPLSEITHKR RISALGPGGL TRERAGFEVR DVHTTHYGRV CPIETPEGPN
IGLINSLATY ARTNGYGFLE TPYRTVKDGV VSKEVDWLSA YEEEKFTIAQ ANAPLDDNGV
LQGNLISVRR AGEFMLASPE EIQYMDVSPK QIVSIAASII PFLEHDDANR ALMGSNMQRQ
AVPTLRADKP LVGTGMERVV ATDSGSCVVA RRGGVVDRVD AARVVVRVNA EEASQGDVGV
DIYNLTKYTR SNQNTCINQT PLVKAGDVIA KGDVLADGPS VDMGELALGQ NILCAFMPWN
GYNFEDSILL SERVVREDRL TTIHVEELNC IARDTKLGAE EITADIPNVA ESLLNKLDAA
GVVHVGAEVR PGDILVGKVT PKGETQLTPE EKLLRAIFGE KASDVKDTSL RVPPGMEGTV
IDVRVFTRDG IEKDSRARAI EEADLEAVRK DLKDRMRIIE GDILARVKSV LVNQVAVGGP
GVKAGSKITA AQLEKIEPSK WLEIRVEGEE AAQAMEEYIA QLAQAQVDID KRFEDKKKKI
QQGDDLAPGV LKMVKVYVAV KRRIQPGDKL AGRHGNKGVV SMIVPEEDMP YMENGQPVDI
CLNPLGVPSR MNIGQILETH LGFAARGLGV KIEEMLKLER AKALIELRAF LDKVYNYKSD
KPVDLDALSD DELIELARNL KKGVPMATPV FDGAVEDEIK YMLELAGLPT SGQVQLYDGR
SGEPFERTTT VGYMYMLKLN HLVDDKMHAR STGPYSLVTQ QPLGGKAQFG GQRFGEMEVW
ALEAYGAAYT LQEMLTVKSD DVNGRNKMYK NIVDGDLKMD AGMPESFNVL LKEIRSLAIN
VELEQGKE
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