Gene Hlac_3222 details

Gene Information

• Locus tag: Hlac_3222
• ID: 7399348
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Halorubrum lacusprofundi ATCC 49239
• Kingdom: Archaea
• Replicon accession: NC_012028
• Strand: +
• Start bp: 469821
• End bp: 471803
• Gene Length: 1983 bp
• Protein Length: 660 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 643707019
• Product: Squalene cyclase-like protein
• Protein accession: YP_002564641
• Protein GI: 222476120
• COG category: [I] Lipid transport and metabolism
• COG ID: [COG1657] Squalene cyclase
• TIGRFAM ID: [TIGR01787] squalene/oxidosqualene cyclases

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAAAGAGT ATCCAACGCG ACGGCGGTTC CTTGCCGGAT CGGTGGGGGC GATGTCGACA 
CTCCCCGTCG GGACCGCGAG TGGAGACATC TGGGACGATG AAGATGAGAT CTTGGGCGAT 
GATGACGACG ATGACGATAT CGAGGAACCC GACTGGGACG ACCTCTGGCG TGCGATTAAT 
CGAACAGAGA CGTATCTTCG CCGGGAGTTG TCGGAGGACA ACACGTGGTA CGACGACGAC 
CTGACACACT GGGATACGAC GGTTCGGTTC GAGGGCGCCG CCGATCTCAG AACCACCGTC 
TACTACGCGC TGTTGACCGA CCGGATCTGG GGGAACGAAG ACGAACGCGA CGACTGTCTC 
TCGTATCTGC TCGACCGGCG GTCGACCGAC GGCGGCTGGG ACGACACGGT AACCAACTTC 
GGGATGCTGC TGCTGTTCGA CCGGATGGAC GACCACGAAT ACGAGTCGGT GGTCGAAGAT 
ATCTTCCGGG AGATTGATGC GAAAAACCAG TCGCTGATGG CCTCGAAAGA CGAGGCAGGC 
TTCACCGATA GGTTCCGAAT GCGATTGCTG TATGCGGTGC TCTCCGATGA CCACAGCTTC 
GACGAACTGT TCCCACGGGA GTTACCGATC CGGGCTGGTG ATCTGATGGC GCTCACGTCG 
GCCTTCGACG GAGAGGCGGT TTCCGCGCAG GATCAGACGG CTCGGCCGAG CTACATCACC 
AGACAGTTAG CGTACTTCCT GCTCGGCGCG ACCGCCTACG ACCGGGAGCT CGACGAGGAC 
GAAACACAAC TGGTCGAGGT CGCCGAGAAC GTGCTCCTGA GCCGACGCCT GACGAACGGC 
GCGTGGAACA CCGTTCCGAC GACGCTCTTT GCGACGTTCG CACTTGTCGA ACGGGGCTAT 
TCATGGTTCG ACGGCGAGGT TGGAACGCCC GTCCGCTGGA TCGCCGACAA CCGGCTGACC 
GACGAGGGAC GCGTCGAGAG CTATCGACTC CCTGTCCGGG ATACGACATT GGTACAGAAA 
GCGCTACTCG CCGCTGGCAG TTCGCCGGAC GCCGAGTTCC TGCAGGAATC GGCCCAGTGG 
CTCTCCGAGG CGCGGACGCC ACAGACGGTC GGTCGTGAGT TGGACCGCGA GCCAGCGCCG 
TTTCGACGCC ACCACGGACA CGGCTGGGGG TACATGCCGC ATGCGTTCTC TAACTGGGAC 
GACACTGCGG TCGCACTCGG CTCGCTGTCG GCGCTCACCG ATGGTGATCT CGACGAACAG 
ATCGACTTCC TCCGTCGGGT ACAAAACCGC GACGGAAGCT GGTCGGCGTA CACGACCGAC 
TTCGCCCCCT TCCAGTCGAC GGAGATCGCC GACGAGGCCC GCTTGACGAT CGGCGACGAA 
CAGTATCAGC TCCGCTTCGG CTATATTCCC GCGCCAGACA TCACTGGAAA CGCCCTTTCG 
ACACTCGGTA TGCAGGGAGA CACCGTCGAC GACGATCGCC ACATCGACGA CGCCGTCTCC 
TATCTGCGAG AGAATCGGGC GGACAACGGG CTGTGGCTCG GCGTCCGGGG GCAGGGCTAC 
ACCTACGGCA CCGCCCGTGT GATGGAGGGG CTCCGAGCAG TCGACGTCGA CATGGATGAC 
GACTTCGTGA CCGCTGCCCG CGGAACACTA CTCAGCCGAC AGAACGACGA CGGTGGCTGG 
GGCGAACAGA CTCGCTACGA TCCGAGCCAG CCGGAATCGG GAAGCATCGA GTATCAACCG 
GGCGAGTCGA CGCCGATACA GACCGGCTGG GCGCTGCAGG CCCTCCTTTA TGGTGGCATC 
GGCCCCGATC GGGAGGCGGT CTGGGACGCC GTCGACTACC TGCTCGAAAC ACAGCAGTCC 
GACGGCTCGT GGGAGGTCGA TCCCGTGCTG TACACCTTCG GCGGCCCGGG GTACAGCACC 
GAAGCGATCA CACAGGCCGC AGTCCTCAGA GCACTCGGTC TGTACGAGTC GACCATCGAC 
TAG 

 

Protein sequence

MKEYPTRRRF LAGSVGAMST LPVGTASGDI WDDEDEILGD DDDDDDIEEP DWDDLWRAIN 
RTETYLRREL SEDNTWYDDD LTHWDTTVRF EGAADLRTTV YYALLTDRIW GNEDERDDCL 
SYLLDRRSTD GGWDDTVTNF GMLLLFDRMD DHEYESVVED IFREIDAKNQ SLMASKDEAG 
FTDRFRMRLL YAVLSDDHSF DELFPRELPI RAGDLMALTS AFDGEAVSAQ DQTARPSYIT 
RQLAYFLLGA TAYDRELDED ETQLVEVAEN VLLSRRLTNG AWNTVPTTLF ATFALVERGY 
SWFDGEVGTP VRWIADNRLT DEGRVESYRL PVRDTTLVQK ALLAAGSSPD AEFLQESAQW 
LSEARTPQTV GRELDREPAP FRRHHGHGWG YMPHAFSNWD DTAVALGSLS ALTDGDLDEQ 
IDFLRRVQNR DGSWSAYTTD FAPFQSTEIA DEARLTIGDE QYQLRFGYIP APDITGNALS 
TLGMQGDTVD DDRHIDDAVS YLRENRADNG LWLGVRGQGY TYGTARVMEG LRAVDVDMDD 
DFVTAARGTL LSRQNDDGGW GEQTRYDPSQ PESGSIEYQP GESTPIQTGW ALQALLYGGI 
GPDREAVWDA VDYLLETQQS DGSWEVDPVL YTFGGPGYST EAITQAAVLR ALGLYESTID