| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_1812 |
|---|
| Symbol | |
|---|
| ID | 7399687 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 1828587 |
|---|
| End bp | 1829618 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 643708880 |
|---|
| Product | H/ACA RNA-protein complex component Cbf5p |
|---|
| Protein accession | YP_002566461 |
|---|
| Protein GI | 222480224 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative
[TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.572421 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCGAC ACTCAGACGA TACCGATGCG AACACGGGGG CGGACACCGG GCGGGACGCC
GACGCGGATG CCGACGGTGA CGCCGTCGAC CCCCTCAGAT CCCCGCCGGA CCAGCGCTCC
GTCCCGGAAC TGCTCCGGTT CGGCGTCGTC AACGTCGACA AGCCCGCCGG TCCCTCCTCC
CACCAGCTCT CCGCGTGGGT GCGCGACGCG ATCAACGAGA CGCTGGCGAC GCTGGATCCG
GACGGGTCCC CGATCCACGG GGTCGCGCAC GCGGGGACGC TCGACCCCAA GGTCACCGGC
TGTCTCCCGA CGCTGACCGG CGACGCGACC CGGGCCGCAC AGGTCTTCTT GGAGGGAAGC
AAGGAGTACG TCTCGGTGCT GGAGCTTCAC GGGTCGCCTC CCGCGGACTT CCGCGACGTG
GTCGCCGAAT TCGAGGCGGA GATCTACCAG AAGCCGCCGC GCAAGAGCGC GGTGACCCGC
CGGCTCCGAA CCCGTACGAT CTACGATCTC GACGTGCTGG AGGTCGACGA CCGACAGGCG
CTCCTCCGGA TCCGGTGTGA GTCCGGGACG TACATCCGGA AGCTGTGTCA CGACATCGGC
CTCGCGACGG GCGTCGGCGC GCACATGGGC CATCTCCGCC GCACCGCCAC CGACCCGTTC
GACGACCGCG ACCTGCACCC CTTACAGGAC CTCGTCGACG GGCTCACGTG GGCCGAGGAG
GGCGACGACG CGTTCCTCCG CGAGGTCGTC CGCCCCGCCG AGGACGCGCT GGTCCATCTC
CCGTCGGTGA CGATCGCTCC CTCCGCCGCG CGCAATGTGG CCACCGGCGC GCCCGTCTAC
GCCCCCGGCG TCATCGACGT GGACTCGGTG TCGGAAGGCG GGGAGGGAGA CGACGGGGAC
GACACCGATC GCGACCCCCC GCTCGTCGCC TGCCACACCC CTGACGGCGC CGCGGTCTGT
CTCGGGCGAC TGGTCGGCGA CCCCGACGCC GAGTCGGGAG TCGTCGTGTC GCTGGAGCGC
GTCCTCGTCT GA
|
|---|
| Protein sequence | MTRHSDDTDA NTGADTGRDA DADADGDAVD PLRSPPDQRS VPELLRFGVV NVDKPAGPSS
HQLSAWVRDA INETLATLDP DGSPIHGVAH AGTLDPKVTG CLPTLTGDAT RAAQVFLEGS
KEYVSVLELH GSPPADFRDV VAEFEAEIYQ KPPRKSAVTR RLRTRTIYDL DVLEVDDRQA
LLRIRCESGT YIRKLCHDIG LATGVGAHMG HLRRTATDPF DDRDLHPLQD LVDGLTWAEE
GDDAFLREVV RPAEDALVHL PSVTIAPSAA RNVATGAPVY APGVIDVDSV SEGGEGDDGD
DTDRDPPLVA CHTPDGAAVC LGRLVGDPDA ESGVVVSLER VLV
|
|---|
| |