| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0587 |
|---|
| Symbol | |
|---|
| ID | 7401723 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | + |
|---|
| Start bp | 605333 |
|---|
| End bp | 606991 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 643707653 |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_002565259 |
|---|
| Protein GI | 222479022 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | [TIGR02456] trehalose synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.504326 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACC GGGACTGGTA CGAAGACGCG ACGATCTACT CGCTCGATAT CAAGACGTTC
AACGACAGCG ACGGGGACGG GTGGGGGGAC TTCCGTGGCG CGATCGAGCG GCTCGACCAC
CTCGACGACC TCGGCGTCGA CGCCGTGTGG ATCCGCCCGT TCTACCCCAG CCCGCTCCGG
GACAACGGGT ACGACGTGGC CGACTACCGC GGCGTCGACG AGCGGCTCGG CACCCTCGAC
GACTTCCGCG AGTTCGCGGA CCGAGCCCAC GAGCGCGGGA TCCGCGTGCT CACCGATCTC
GTGTTCAACC ACACGTCGAA CGAACACGAG TGGTTCCAAC GGGCGTGCGA GGACCCCGAA
TCGGAGTACC ACGACTACTA CCTGTGGACG AGCCACGTCG ACGACGCGCA CAACCGACAG
AACATCTTCC CCGAGTACGA GGACGGCGTC TGGTCGTACG ACGAAACTGC CGACAAACAC
TACTTCCACC AGTTCTACGG CCACCAGCCC GACCTTAACG TCGCGAATCC CGCCGTCCGC
GAGGAGCTGT ACGACGTGCT CCGGTTTTGG CTTGATCAGG GCGCCGACGG GTTCCGGATC
GACGCCGCTC ACCCCATGCT GCTGCCGAAG GGTCACAACG CGTCGACGCT CCACGACACC
GACCTCGACG AGCCCATCGA CCTGTTCAAG CGGATGCGCG AGGTCGTCGA GGCGGAGCAG
TCGGACGCGG TCTTACTCGC CGAGGCCGAC GACGAGCCCG AGAACCTCGA CTACTACTTC
GGCGACGGAG AGGCGTTCCA CCTCCAGTTC AACTTCGTGA TGAACGCCCA CCTCACGTAC
GGGGTCGGGG TGACGGACAC GTGGCCGCTC GACCGCGCCG AGGAGCTCCT CCCGGACGTC
TCCGGCGTGG GCGGGTGGGT GAACTTCCTG CGGAACCACG ACGAGTGGAA CCTGTTGAAG
CTCCCGCAGG AGTCGTTCGA TCACGCCCGC GAGTACTTCG GCGACGACGC CGGCAACTCG
TGGATCTTCG AGCGCGGCCA CCGGCTCCGG CTCGCAGACT TGTACGCCGG GGACCACGAT
CGGATCGCGG TGGCTCACAG CCTGCTGTTC TCCCTGCCGG GATCGGTCGC CCTCCAGTCC
GGCGACGAGA TCGGGATGGG CGCCGACCTC TCCTTACCCG AGCGCGAGGC CGTCCGCACC
CCGATGCAGT GGGACGACTC GGCGAACGGC GGCTTCTCGA CGGCCAACCA GGACGACTGT
TACAACCCCG TTATCGACGA GGGCGAATAC GCCTACGAGC GAATAAATGC CGCCGCACAG
CGCGACGACC CCGACTCGCT GCTCTCTCGA GTCCGGGACC TCTCGGCGGC CCGCGATGAC
TGCCCGGCGA TCGCTCGAGG TTCGTACTCA CTCCCCGAGC CCGACCACAA GGAAACGCGC
GTCCACCGGT TCGACCACGG GGAAGGCGAG TCCGAGACCG TCCTGCTCTG CGCGCACAAC
CTCGCGGACG GCTACCGCGA GGAGGTAGTC GGGTTCGACG TCGACCCCGA CACGGTCGAA
CGCGTCGTCG GCGACGGCGG CTATCACGTC GCTGAGGGCG GCGTCACCTT CTTGCTCGAC
GAGTGCGATT ACGTCTGGCT GCGCGGCGAG AAGCGGTAG
|
|---|
| Protein sequence | MSDRDWYEDA TIYSLDIKTF NDSDGDGWGD FRGAIERLDH LDDLGVDAVW IRPFYPSPLR
DNGYDVADYR GVDERLGTLD DFREFADRAH ERGIRVLTDL VFNHTSNEHE WFQRACEDPE
SEYHDYYLWT SHVDDAHNRQ NIFPEYEDGV WSYDETADKH YFHQFYGHQP DLNVANPAVR
EELYDVLRFW LDQGADGFRI DAAHPMLLPK GHNASTLHDT DLDEPIDLFK RMREVVEAEQ
SDAVLLAEAD DEPENLDYYF GDGEAFHLQF NFVMNAHLTY GVGVTDTWPL DRAEELLPDV
SGVGGWVNFL RNHDEWNLLK LPQESFDHAR EYFGDDAGNS WIFERGHRLR LADLYAGDHD
RIAVAHSLLF SLPGSVALQS GDEIGMGADL SLPEREAVRT PMQWDDSANG GFSTANQDDC
YNPVIDEGEY AYERINAAAQ RDDPDSLLSR VRDLSAARDD CPAIARGSYS LPEPDHKETR
VHRFDHGEGE SETVLLCAHN LADGYREEVV GFDVDPDTVE RVVGDGGYHV AEGGVTFLLD
ECDYVWLRGE KR
|
|---|
| |