| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hlac_0416 |
|---|
| Symbol | |
|---|
| ID | 7401033 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorubrum lacusprofundi ATCC 49239 |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_012029 |
|---|
| Strand | - |
|---|
| Start bp | 436055 |
|---|
| End bp | 437701 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 643707480 |
|---|
| Product | thermosome |
|---|
| Protein accession | YP_002565089 |
|---|
| Protein GI | 222478852 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0459] Chaperonin GroEL (HSP60 family) |
|---|
| TIGRFAM ID | [TIGR02339] thermosome, various subunits, archaeal |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 0.213711 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCAGG GTCAGCCGAT GATCATCATG GGCGACGACG CCCAGCGCGT CAAGGACAAG
GACGCACAGG AGTACAACAT CTCCGCGGCG CGCGGCGTCG CCGAATCCGT ACGTTCGACG
CTCGGGCCGA AAGGGATGGA CAAGATGCTC GTCGACTCGA CGGGCGGCGT CACCATCACG
AACGATGGCG TCACCATCCT GCAGACGATG GACATCGACA ACCCGACCGC CGAGATGATC
GTCGAAGTCG CCCAGACTCA GGAGGACGAG GCCGGCGACG GCACGACGAG CGCGGTCGCG
ATCGCGGGCG AGCTCCTGAA GAACGCCGAG GACCTTCTCG AACAGGATAT TCACCCGACG
GCCGTCATCA AGGGCTTCAA CCTCGCGAGC GAGTACGCCC GCGAGCAGGT CGACGAGGTC
GCCACACAGG TCGACCCCGA CGACACCGAG ACCCTGAAAA GCGTCGCCGA GACGTCGATG
ACCGGCAAGG GCGCGGAGCT CGATAAGGAC ACCCTCGCTG ACCTCGTCGT CCGCGCGATT
CAGGGCGTCA CCGTCGAGGC CGACGACGGC TCGCACGTCG TCGATCTGGC GAACCTCAAC
ATCGAGACGC GCACCGGCCG CGCGGCCGGA CAGTCCCGCC TGCTCTCGGG TGCCGTCATC
GACAAGGACC CGGTCCACGA GGACATGCCG ACCGACTTCG AGGACGCGAA CGTCCTCCTC
CTCAACGACC CGATCGAGGT CGAGGAGGCC GACGTTGACA CCGCCGTCAA CGTCGAGTCG
CCCGACCAGC TCCAGCGCTT CCTCGATCAG GAAGAAGAGC AGCTCCGCGA CAAAGTCGAC
AAAATCGTCG AATCTGGCGC CGACGTGGTC TTCTGTCAGA AGGGGATCGA CGACCTCGCC
CAGCACTACC TCGCGAAGGA GGGCATCCTC GCCGTCCGCC GGACGAAGAA GTCCGACCTG
ACCTTCCTCA AGAACGTCCT CGGCGCGCCC ATCGTCAGCG ACCTCGATTC GCTCACCGCC
GACGACCTCG CGATCGGTAC GGTCAGCCGT GACACCGAGG AGGGGCTGTT CTACGTCGAG
GGCGAGGACG CCCACGGCGT CACCCTCCTG CTGTACGGCA CCACCGAGCA CGTCGTCGAC
GAGCTCGAAC GCGGCATCCA GGACGCCATC GACGTGGTCT CGACGACCGT CTCCGACGGG
CGGACGCTCC CCGGCGGCGG CGCCATCGAG GTCGAGCTCG CGAGCCGTCT GCGCGACTAC
GCCGACACCG TCTCGGGCCG CGAGCAGCTC GCCGTCGAGG CGTTCGCCGA CTCGCTCGAA
CTGATCCCCC GCGTGCTCGC CGAGAACGCC GGGCTCGACG CCATCGACCT GCTCGTCGAC
CTCCGCGCGG CCCACGAGGC CGGCGACACC GAGGCCGGAC TGAACGTCTT CTCCGGCGAA
GTCGAGAACA CGACCGAGGC CGGCGTCGTC GAGACGGCTC ACGCGAAAGA GCAGGCGATC
GCCTCCGCCG CCGAGGCCGC GAACCTCGTG CTGAAAATCG ACGACATCAT CTCTGCGGGC
GACCTGTCGA CCGGCGGCGA CGGCGACGAG GGCGGCGCCC CCGCCGGCGG CATGGGCGGC
ATGGGCGGTA TGGGCGGTGC GATGTAA
|
|---|
| Protein sequence | MQQGQPMIIM GDDAQRVKDK DAQEYNISAA RGVAESVRST LGPKGMDKML VDSTGGVTIT
NDGVTILQTM DIDNPTAEMI VEVAQTQEDE AGDGTTSAVA IAGELLKNAE DLLEQDIHPT
AVIKGFNLAS EYAREQVDEV ATQVDPDDTE TLKSVAETSM TGKGAELDKD TLADLVVRAI
QGVTVEADDG SHVVDLANLN IETRTGRAAG QSRLLSGAVI DKDPVHEDMP TDFEDANVLL
LNDPIEVEEA DVDTAVNVES PDQLQRFLDQ EEEQLRDKVD KIVESGADVV FCQKGIDDLA
QHYLAKEGIL AVRRTKKSDL TFLKNVLGAP IVSDLDSLTA DDLAIGTVSR DTEEGLFYVE
GEDAHGVTLL LYGTTEHVVD ELERGIQDAI DVVSTTVSDG RTLPGGGAIE VELASRLRDY
ADTVSGREQL AVEAFADSLE LIPRVLAENA GLDAIDLLVD LRAAHEAGDT EAGLNVFSGE
VENTTEAGVV ETAHAKEQAI ASAAEAANLV LKIDDIISAG DLSTGGDGDE GGAPAGGMGG
MGGMGGAM
|
|---|
| |