| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_2351 |
|---|
| Symbol | |
|---|
| ID | 4711193 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Halorhodospira halophila SL1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008789 |
|---|
| Strand | + |
|---|
| Start bp | 2576347 |
|---|
| End bp | 2578113 |
|---|
| Gene Length | 1767 bp |
|---|
| Protein Length | 588 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639856826 |
|---|
| Product | TrkA domain-containing protein |
|---|
| Protein accession | YP_001003916 |
|---|
| Protein GI | 121999129 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0471] Di- and tricarboxylate transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.119552 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGCTGGG AGGCGTACCT GACCGCCGCG GTCGTCGTCG CCCTGCTGAC CGCCCTGATC
ACCACCCGCG TGGCCCCGGA CATGGCCTTC CTGGGCGCGG TGACCGTGCT GCTGCTCAGC
GGCGTGGTGG GACCGCGGGA GGCCTTTGAA GGCCTCTCCA ACCCCGGCGT TCTCACCGTG
GCCGCCCTTT ACGTCGTCGT CGCCGGCATC CGCGAGACGG GCGGCGTGCA GTGGATCAGC
ACCCGCATGC TCGGCCGGCC CCGCTCACTG TTCGATGCCC AGCGCCGGCT CACCCTGCCG
GTGGCCGGGT TCTCGGCCTT CCTCAACAAC ACCCCGGTGG TGGCCATGCT CATCCCGGCG
GTGGGCGACT GGGCGCGCAA GCACAACCTG GCCGAATCGA AGCTGCTGCT GCCCCTGTCC
TACGCCGCCA TGCTCGGCGG CACCTGCACG CTCATCGGCA CCAGCACCAA CCTGGTCGTC
AACGGCGCCC TGGAGCAGCG CACCGGTGAA GGGCTCATGC TCTTCGAGCT GGCCTGGGTC
GGCATCCCGG TGCTCATCGC CGGGCTGGCC TTCCTGTTCG CCACCAGCCA CTGGCTGTTG
CCCGACCGCC GCCCCGCGGC GGAGACCCTC GACGACCCGC GGGAGTACAC CGTGGAAATG
ATCGTCGAGG CCGAGGGCCC ACTGGTCGGG CGGAGCATCG AACGCGCCGG ACTGCGCCAC
CTGCCCGGGT GTTATCTCAT GGAGATCGAC CGCGGCGGCG AGATCCTGCC CGCCGTCTCG
CCTCGGGAGA AGCTGCGCGC CGGCGACCGG CTGGTGTTCG TCGGGGTGGT GGACTCCGTG
GTGGAGCTGC AGAAGATCCG CGGCCTCACC CCCGCCACCA ACCAGGTCTT CAAGCTCGAC
GGCCGCCGCT CCGATCGCCG GCTGGTCGAG GTGGTGGTCT CGGAGACCTG CCCGGTGGCC
AACCGCACGG TGCGCGATGG CCGCTTCCGC ACCCGCTACG ACGCGGTGGT CATCGCCGTG
GCGCGCAACG GCGAGCGCGT CGACGGCAAG ATCGGCGACA TCATCCTGCG CCCCGGCGAC
ACCCTGCTCC TGGAGGCCGG CGAAGGCTTC GTCGAGCGCC AGCGCAACGC CCGCGACTTC
CTGCTGGTGC GCGCCATCGA GGGCGCGGCG GTGCCGCGCC ACGACCGCGC CTGGCTGGCA
CTGGGGATCC TGGGCGCCAT GCTCGGCATC GTCGGGGTCG GCTGGCTATC GATGCTCGAA
GGCGCCCTGG CCGCCGGGGC GGCACTGCTG CTCACCCGCT GCCTGACCCT CAACGCCGCC
CGGCAGGCCA TTGACTGGTC GGTGATCCTG ACCATCGCCG CGGCGTTCGG CATCGGCGCC
GCCATGGAAC AGACCGGACT GGCTCACACC ATCGCCGACG GCCTGCTTGG CCTCGCAGGC
GAGCAGCCGT GGCTGAACCT GGCCGTGATC TACCTGGTCA CAGCGCTGTT CACCGCGGTC
ATCACCAACA ACGCCGCCGC GGTCCTGATG GTCCCGATCG CCGGCTCGGT GGCCGGGGAT
TTGGGGGTCA GCGTCCTCCC CTTCGCCGTG GCCATCATGC TGGCCGCCTC GGCCAGCTTC
GCCACCCCCA TGGGCTACCA GACCAACCTG ATGGTCTACG GCCCCGGCGG CTACCACTTC
ACCGACTACC TGCGCGCCGG CCTGCCGCTG AACCTGGTCA CCGCAGCCGT AGCGCTGGCG
GTGATCCCGT GGGTGTGGCC GTTCTAG
|
|---|
| Protein sequence | MGWEAYLTAA VVVALLTALI TTRVAPDMAF LGAVTVLLLS GVVGPREAFE GLSNPGVLTV
AALYVVVAGI RETGGVQWIS TRMLGRPRSL FDAQRRLTLP VAGFSAFLNN TPVVAMLIPA
VGDWARKHNL AESKLLLPLS YAAMLGGTCT LIGTSTNLVV NGALEQRTGE GLMLFELAWV
GIPVLIAGLA FLFATSHWLL PDRRPAAETL DDPREYTVEM IVEAEGPLVG RSIERAGLRH
LPGCYLMEID RGGEILPAVS PREKLRAGDR LVFVGVVDSV VELQKIRGLT PATNQVFKLD
GRRSDRRLVE VVVSETCPVA NRTVRDGRFR TRYDAVVIAV ARNGERVDGK IGDIILRPGD
TLLLEAGEGF VERQRNARDF LLVRAIEGAA VPRHDRAWLA LGILGAMLGI VGVGWLSMLE
GALAAGAALL LTRCLTLNAA RQAIDWSVIL TIAAAFGIGA AMEQTGLAHT IADGLLGLAG
EQPWLNLAVI YLVTALFTAV ITNNAAAVLM VPIAGSVAGD LGVSVLPFAV AIMLAASASF
ATPMGYQTNL MVYGPGGYHF TDYLRAGLPL NLVTAAVALA VIPWVWPF
|
|---|
| |