| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_2255 |
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| Symbol | |
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| ID | 4709143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | + |
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| Start bp | 2477026 |
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| End bp | 2478144 |
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| Gene Length | 1119 bp |
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| Protein Length | 372 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 639856731 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001003821 |
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| Protein GI | 121999034 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.936423 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCGGTC GACTGCGATC CGGAGCGGCC GCGTTGCTAT TGATCGCTCT GCCTGTCTTC
GCGGCCCCAC CTGATCCGTT TCAGGGTCGG GTGGACGAGG AGGGCGCAAC CCGGCCGGAG
CCCGCCCTGC GCACCCTGCC CCTGGTCCAC GCCGAGGCTG CGCAGCTCGC GGAACTCCTG
CGCGACGAGA CCGGCGTGCT CTCAGAGAGC GGCCACGCCA GCGTCGATGA ACGCACCAAC
ACGCTGATCC TCCAGGACAC GCCGGCCCGC CTGGAAGAGG CCGAACAGCT CGTCCGCGAA
CTCGATCGGG CCAACCGTCA GGTCATGATT GAGGCGCGCA TCGTGTTGGC CTCGGGGGAG
TACTCCCGGG AGTTGGGCAG CCGACTGGGG CTATCCAGCG AACGGGGCGA CGGCCACTTC
GCCTTCGACA GCCTGCCCGG GAGCAACGAC GCGGCTGTGG GCGACGGGCT TCTTGCCGAG
CTGCCGCCGG TGGGCGAAGG CGCGCGGCTG AGCGTCTCAG TTGGCGAGGT GGGCGAGCGG
CTGCTACAGC TCGAACTCTC GGCGATGGAG GCCGAGGGAC ACGGGCGCGT GGTCTCCAGC
CCGCGGGTCC TGACCACCGA GCGCCAGGCC GCCCGCATCG AGCAGGGCGT CCAGATCCCC
TACCAGGAGA CCGCCGAGTC CGGTGCCACG GCGGTCGCCT TCCAGGACGC TGCCCTGTCC
CTGACCGCCA CCCCGCAGGT GACCGAGGAC GACGCAGTCT CCCTGGCCCT GCGCGTCACC
AAGGACGCCG TCGGCCAGAT CTACGAGGGG GTTCCCAGCA TCGACACCCA GGCCGTGACC
ACGCACCTTC GAGTCCAGGC CGGTGAGACC ATCGTCCTCG GCGGAGTCCG CGAACACGAA
CAGCGCAAGC AGCGCCAGAG GGTCCCGTGG CTCGGAGAAC TGCCTCTCAT TGGCTGGCTG
TTCCGCCAGC GCATGTCCGA GCAGAGCCAC CATGAGCTGC TGGTCTTCGT CACCCCGCGC
CTGGTCGAGG ACGGCCCGTC CTCATCGACG GCCGTTGACG ACGCCGCCCC CCGCCCCCAC
ATTGACTCAC CCAGCCGAAC AACCGAGGAC GATTGGTGA
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| Protein sequence | MSGRLRSGAA ALLLIALPVF AAPPDPFQGR VDEEGATRPE PALRTLPLVH AEAAQLAELL
RDETGVLSES GHASVDERTN TLILQDTPAR LEEAEQLVRE LDRANRQVMI EARIVLASGE
YSRELGSRLG LSSERGDGHF AFDSLPGSND AAVGDGLLAE LPPVGEGARL SVSVGEVGER
LLQLELSAME AEGHGRVVSS PRVLTTERQA ARIEQGVQIP YQETAESGAT AVAFQDAALS
LTATPQVTED DAVSLALRVT KDAVGQIYEG VPSIDTQAVT THLRVQAGET IVLGGVREHE
QRKQRQRVPW LGELPLIGWL FRQRMSEQSH HELLVFVTPR LVEDGPSSST AVDDAAPRPH
IDSPSRTTED DW
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