| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Hhal_0237 |
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| Symbol | |
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| ID | 4709928 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Halorhodospira halophila SL1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008789 |
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| Strand | + |
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| Start bp | 272309 |
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| End bp | 273961 |
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| Gene Length | 1653 bp |
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| Protein Length | 550 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639854697 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001001833 |
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| Protein GI | 121997046 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000527978 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGACCGATC CCAACAACAC CGATCCGAAA GAGGTGAAGA AGGAGATCGA GGAGCTGGAG
CAGGCCTACG AGACCGACCA CGAGATCGGC GATCAGAACA TCAGCACCGA GATCAAGCCC
ATCGGGCTGG CGCTGGATCT GCACAACCCG GTCTTCATCG TCAGCTCCGC GCTGATCCTC
GTCTTCCTCA TCGGCACCCT CATCTTCACG GCCCCCGCCC AGGAGGCGCT GGAAGGCGTC
CGCGGCTGGG CCACCAGCAG CTTCGACTGG TTCTTCCTCA CCGCCGGCAA CATCTTCGTC
CTCTTCTGCC TGCTGCTGAT CGTCCTGCCC CTGGGCAGCA TCCGCATCGG CGGACAGGAC
GCGAAGCCGG ACTTCTCGCG ACTGTCCTGG TTCACCATGC TCTTCGCCGC CGGCATGGGC
ATCGGCCTGA TGTTCTGGGC GGTGGCCGAG CCGGTGGGCT ACTACACCGA GTGGTTCGGC
TCGCCGTTCA ACATCGAGGG CGGCACCGAC GAGGCGGCCA AGGCGGCCAT GGGTGCGACC
ATGTACCACT GGGGCCTGCA CCCGTGGGCC ATCTACGGCG TCATGGCGCT GGCCCTGGCC
TTCTTCACCT ACAACAAGGG GCTGCCGCTG ACCGTGCGCT CGGTCTTCTA CCCCCTCCTG
GGTGAGCGGG TGTGGGGGCC GCTGGGCCAC ATCATCGACA CCGTGGCGGT GCTGGCCACC
ATCTTCGGCC TGGCCACCTC CCTGGGCTTC GGCGCCCAAC AGGCGGCCAG CGGCCTGAGC
TACGTCTTCG AGGCCGTGCC CGATACTCTG GGCACCCAGG TGGCGATCAT CATCGGCGTC
ACGGTGGCGG CGCTCGTCTC GGTGCTGCGC GGCATCGACG GCGGCATCAA GCTGCTCAGC
AACCTCAACA TCAGCCTCGC CGGGCTGCTG ATGCTCTTCG TCATCATCGC CGGCGGCGCC
ATCGCCTTCG TCACCCAGCT CTGGCACACC ACCAGCGCCT ACGCCGGGGA CTTCTTCGCC
CTCTCCAACC CGGTGGGCCG CGAGGACGAG ACCTTCCTCC AGGGCTGGAC GGCCTTCTAC
TGGGCGTGGT GGATCAGCTG GTCGCCCTTC GTCGGCATGT TCATCGCCCG GGTCTCCCGC
GGCCGCACGG TGCGCGAGTT CATGACCGCG GTGCTGATCG TGCCCACGGT GGTGACCATC
TTCTGGATGA GCGCCTTCGG CGGCGTGGGC CTGCAGCAGG CCATCGAGGG CATCGGTGCC
CTGGCCGACG GCATCGGCGC CGACGAGTCC ATGGCCCTGT TCCACATGCT GGAGCAGCTG
CCCTGGACCC TGCTCACCGC CTCGGTGGCG GTCTTCCTGG TGCTGGTCTT CTTCGTGACC
TCGTCGGACT CCGGCTCGCT GGTGATCGAC AGCATCACCG CCGGCGGCAA GACCGACGCC
CCGGACGCCC AGCGCGTCTA TTGGGTGGTC ATGGAGGGCC TGATCGCCGG TGTGCTGCTG
TTCATCGGCG GGGACGCCGC CCTCAGCGCC CTGCAGGCGG GGGCGGTCTC GGCCGGGCTG
CCGTTCACCG TGGTCCTGCT CCTGGTCTGC CTGAGTCTGC TGATCGGGCT GCGCCACGAG
CGGCGGCTGA TCAAGCTGAC CCAACAGGCC TGA
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| Protein sequence | MTDPNNTDPK EVKKEIEELE QAYETDHEIG DQNISTEIKP IGLALDLHNP VFIVSSALIL
VFLIGTLIFT APAQEALEGV RGWATSSFDW FFLTAGNIFV LFCLLLIVLP LGSIRIGGQD
AKPDFSRLSW FTMLFAAGMG IGLMFWAVAE PVGYYTEWFG SPFNIEGGTD EAAKAAMGAT
MYHWGLHPWA IYGVMALALA FFTYNKGLPL TVRSVFYPLL GERVWGPLGH IIDTVAVLAT
IFGLATSLGF GAQQAASGLS YVFEAVPDTL GTQVAIIIGV TVAALVSVLR GIDGGIKLLS
NLNISLAGLL MLFVIIAGGA IAFVTQLWHT TSAYAGDFFA LSNPVGREDE TFLQGWTAFY
WAWWISWSPF VGMFIARVSR GRTVREFMTA VLIVPTVVTI FWMSAFGGVG LQQAIEGIGA
LADGIGADES MALFHMLEQL PWTLLTASVA VFLVLVFFVT SSDSGSLVID SITAGGKTDA
PDAQRVYWVV MEGLIAGVLL FIGGDAALSA LQAGAVSAGL PFTVVLLLVC LSLLIGLRHE
RRLIKLTQQA
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