| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4638 |
|---|
| Symbol | rplT |
|---|
| ID | 5736485 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 5927067 |
|---|
| End bp | 5927423 |
|---|
| Gene Length | 357 bp |
|---|
| Protein Length | 118 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641281802 |
|---|
| Product | 50S ribosomal protein L20 |
|---|
| Protein accession | YP_001547397 |
|---|
| Protein GI | 159901150 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0292] Ribosomal protein L20 |
|---|
| TIGRFAM ID | [TIGR01032] ribosomal protein L20 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000337844 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCACGTA TCAAACGTGG CATTATGACG CACAAGCGTC ACAAGAAGCT TTTGAATCAA
GCCAAGGGTT TCCGCGGCAG CCGTTCTCAC AACTATAAAA CCGCTCACGA AGCAGTGATG
AAGGCGCTTG CCTACGCATA TCGCGACCGC CGCAACCGCA AACGCGATTT CCGCCGCTTG
TGGATCGTGC GGATCAACGC TGCTGCTCGC TTGAATGGTT TGAGCTATAG CAATTTGATC
AATGGCTTGA ACAAGGCTGG CATCGTGATC GATCGCCGCC AATTGGCCGA CTTGGCTGTC
CGCGATGCTG CCGCTTTCAC GGCAATTGTC GCTCAAGCTA AGCAAGCTTT GGCCTAG
|
|---|
| Protein sequence | MARIKRGIMT HKRHKKLLNQ AKGFRGSRSH NYKTAHEAVM KALAYAYRDR RNRKRDFRRL
WIVRINAAAR LNGLSYSNLI NGLNKAGIVI DRRQLADLAV RDAAAFTAIV AQAKQALA
|
|---|
| |