| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_3578 |
|---|
| Symbol | |
|---|
| ID | 5735439 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 4498670 |
|---|
| End bp | 4499773 |
|---|
| Gene Length | 1104 bp |
|---|
| Protein Length | 367 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641280727 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001546342 |
|---|
| Protein GI | 159900095 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAATTTC GTCATTATCT TCGAATGTTA GGGCGCGGCT GGTGGCTGAT CGCTCTGGCA
GCATTAACTG GGTCAACTTT GGCGCTGGCC CGCGCTTATG TAACTGAGCC TGAGTATCGC
ACGCGCACGC GCCTGTTGCT CAGCCCCAAC TTGGCACGGG TTGATAGCGG CCAAGAGTTA
TATAGCGTTA CCACCTTGCA AAATCGTACA ATCGTCAATA CGATTGCCGA AATTCTGAAT
AGCGGCAGCC CGTTCAAGGA AACTGGCTCG GTGCTTAATC TGCCGCCAGC CGAAGTTTTG
CGCTACAAAA ACAATGCGGT GACAGTTCCT GAAGCCAACG TTTTGGAAGT CTATGTTGAT
GGGCCTGATG CGCCAACCAC TGCCTTGTTA GCCAATAGTT TGGCTCAACG CACCATTGAT
TTTGTTGATC AAAAATATCC CAGCTATAGC CTAACCGTAC TTGACCCAGC CTTGCCCTCA
TCAACCCCCC AAAGCCCGCA GCCAGTTCGT GACACGACCT TGGCCTTGAT TTTGGGTGCA
GTTGTTGGTG CAATTATCGC GATTGTGCAA GAGCAACTCA AAACGCCGTT GGAAGCACTG
CGTCGCCGCA GCACCGTCGA TGCCGTTTCG ACCGCCTTTA CCCGCCGCCA CTTCGACCAA
CAATCCAAGG AAGCGCTGGG TCGCAGCTCG ATCGCCTCGT TGGGTTTGGT CTATCTCGAT
GGCATGCAAG ATGTGATCGA TAGTATGCCT GCGCCAGTTG TGCAGCGGGT GTTGCGCCAT
GCCAAAAATG TGTTGCGCAA CGAACTACGC GGCAACGATA TTGTGGGCCG TTGGGATAAC
ACGACCTTCT CGATTTTGTT GCCCGAAACC CCCGAAATTG CCGCCACGCG CACGCTTGAT
CGGATTTTGA ACGCGCTTGA TCAGCCAGTC GAAACTGGGA TCGATGACGT GGTGGTCAAA
CTCACGCCCT ATGCTGGTGG AGCCACCCGT CGCAACAATA TGGCTTATGC CCAATTAGTC
GAAGAAGCTG AATCGGCCTT GACCCGCTCG TATCGCAGTG GCGAAAAGAA TGTGCTCTTC
TCAGCCGTTG AACAACCTGC CTAA
|
|---|
| Protein sequence | MEFRHYLRML GRGWWLIALA ALTGSTLALA RAYVTEPEYR TRTRLLLSPN LARVDSGQEL
YSVTTLQNRT IVNTIAEILN SGSPFKETGS VLNLPPAEVL RYKNNAVTVP EANVLEVYVD
GPDAPTTALL ANSLAQRTID FVDQKYPSYS LTVLDPALPS STPQSPQPVR DTTLALILGA
VVGAIIAIVQ EQLKTPLEAL RRRSTVDAVS TAFTRRHFDQ QSKEALGRSS IASLGLVYLD
GMQDVIDSMP APVVQRVLRH AKNVLRNELR GNDIVGRWDN TTFSILLPET PEIAATRTLD
RILNALDQPV ETGIDDVVVK LTPYAGGATR RNNMAYAQLV EEAESALTRS YRSGEKNVLF
SAVEQPA
|
|---|
| |