Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Haur_1602 |
Symbol | |
ID | 5733489 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Herpetosiphon aurantiacus ATCC 23779 |
Kingdom | Bacteria |
Replicon accession | NC_009972 |
Strand | + |
Start bp | 1858512 |
End bp | 1860437 |
Gene Length | 1926 bp |
Protein Length | 641 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641278741 |
Product | RND family efflux transporter MFP subunit |
Protein accession | YP_001544373 |
Protein GI | 159898126 |
COG category | [M] Cell wall/membrane/envelope biogenesis [V] Defense mechanisms |
COG ID | [COG0845] Membrane-fusion protein [COG1566] Multidrug resistance efflux pump |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTGAAA GCTCAGCACA GCCCAAAAAA CGTGGCTATA AATGGTTTGT TATTGGCGGC GCGGTCTTAT TAGCGCTGGT GTTAATGCCG TTTGTCTTTG GTGGCGATGA TCCATCGACC GTCTCGGCCA GCACTACCAC GACGATTCAG CGCGGTCGTT TGGTTTCATC GGTGCTTGGC AGCGGAACGA TTAACCCCAA GCAAAGCCTT GATCTTACCT TTCAAACGAC TGGAATTGTC AGCACCGTCT TGGTCAGCGA AGGCCAACAG GTGGTAGCAG GCCAGATGCT GGCTGAGCTT GATGATCGTA ATTTGGCATT AAGCGTGCTT TCCGCTGAAG CCAATTTGCA AAGTGCCCAA GCCCGTTTGC GCCAAACCCA AGAGGGCAAT GCTCGCCCAG AGGATTTGGC CGCTTCGCAA GCCAGCGTTG ATAATGCGAA GGCCAATTTG CAAAAGACCG TAACTGGCAA TGCTACCGCT GCTGATATTG CCTCGGCCCA AGCCAGTGTT GCTAACGCCG AAGCCCAATT ACGCAAAGCC AAAAATGGCA CCGCTACGCC AGCTGATTTG GCCAATGCCG AAGCCTCAGT CCGTTCAGCC CAAGCCAAGC TTGATGATCT GCGGGCTGGC CCCAAACCAG AAAAGGTTTC CAGCGCCCAA GCCACGCTTG ATCAGGCTAA ATCAAGCTTA GAGCAAGTGA AATCTGATGC TTCGAAGGCC AAAAATCAAG CCTCACTTGA TCGTGATACC GCCGCCAATG CGGTGCGTAA CGCCCAAACC AGCCTCAGCC AAGTGTATTG GGAAACCCAC GATGCTGATG GGAATTGGAA GAAAAAGCCC GATGATTTTG GCTATCAAAC CGATGTGGAT CGCTATAACA ATGCCGTGCG CGATGAACAA GATGCCCAAA CCAAGCTCGA CGCGGCCCAA TTGGCCTATG ACAATGCCGT AACCCAAGAA GGTTTGGATA TTGCTAATGC TGAGGCCAAA GTGCGTGATG CTGAAGTGCA ATTGCAAACT GTGCTCAAAG GTGCAACCGC GCTCGAAATT ACCCAAGCTG AGGCCGCGCT CGACCAAGCC AAAGCTAACC TCGATAAACT CAAACAAGGC GGAACCGCTG ATGATGTCGC GGCAGCCCAA GCCAACCTCG ACCAAGCTAA AGCCAATTTG CGCAAATTGA CCCAAGGTGG CACGGCGGCT GATGTTGCGG CAGCCCGAGC CAATGTTGAT CAAGCCGAAG CCAACCTTGA TAAATTAACA GCCCCACCAA CTGATACTGA TTTGGCGATT CAAGAAGCAG CAGTTTCACA AAGCGAGCAA TCGTTAAAAC AAGCGCAATT ACAACGTGAT AATGCGACCT TGCGTGCTCC TTTTGCTGGC GTGATTACCT CGGTTTCGAT TGTGCCTGGT GGCCCTTCGA GCGGTGCGGT GATGCATATT CTTGATCGTA GTGGCTTGTA TGTAGAGCTG AATTTGAGCG AAACTGATGT GGCATTAGTT ACGCTGAATC AAAAAGTTGA GTTAACGATT GATGCGCTCG ATGCCTGGAG CGCCGAGGGT ACGGTCAGTT ATATCTCGCC GGTGGCCGAA GTATCGAACG GCGTGGTGAT TTATCGGGTC AAAATTAGCG TGCCTAGCAA CGACCCAATG GTTAAAGTTG GCATGACCGT CAACACCAAC ATTATTCTCA GCGAAAAAAG TGATGTATTG CTGGTGCCAA ATTCAGCCTT GTTGCCCAAA GGTAGCGGAC GGGTGGTGCA AGTGCCCGAT GGCGCTGGTG TACGTGAGGT CGATGTGGTG ACTGGCATCA GCGATGGCTC ATTTACCGAA GTGTTGAGTG GCTTGAATGA AGGCGATACG ATCATCGCCG TGCCAACTGC CGCCTCGGAT AGTGGCAATG GTGGGTTATT CGGCGGAGGC CGCTGA
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Protein sequence | MAESSAQPKK RGYKWFVIGG AVLLALVLMP FVFGGDDPST VSASTTTTIQ RGRLVSSVLG SGTINPKQSL DLTFQTTGIV STVLVSEGQQ VVAGQMLAEL DDRNLALSVL SAEANLQSAQ ARLRQTQEGN ARPEDLAASQ ASVDNAKANL QKTVTGNATA ADIASAQASV ANAEAQLRKA KNGTATPADL ANAEASVRSA QAKLDDLRAG PKPEKVSSAQ ATLDQAKSSL EQVKSDASKA KNQASLDRDT AANAVRNAQT SLSQVYWETH DADGNWKKKP DDFGYQTDVD RYNNAVRDEQ DAQTKLDAAQ LAYDNAVTQE GLDIANAEAK VRDAEVQLQT VLKGATALEI TQAEAALDQA KANLDKLKQG GTADDVAAAQ ANLDQAKANL RKLTQGGTAA DVAAARANVD QAEANLDKLT APPTDTDLAI QEAAVSQSEQ SLKQAQLQRD NATLRAPFAG VITSVSIVPG GPSSGAVMHI LDRSGLYVEL NLSETDVALV TLNQKVELTI DALDAWSAEG TVSYISPVAE VSNGVVIYRV KISVPSNDPM VKVGMTVNTN IILSEKSDVL LVPNSALLPK GSGRVVQVPD GAGVREVDVV TGISDGSFTE VLSGLNEGDT IIAVPTAASD SGNGGLFGGG R
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