| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_1279 |
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| Symbol | |
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| ID | 5733172 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | + |
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| Start bp | 1488409 |
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| End bp | 1490091 |
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| Gene Length | 1683 bp |
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| Protein Length | 560 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 641278419 |
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| Product | alpha amylase catalytic region |
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| Protein accession | YP_001544055 |
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| Protein GI | 159897808 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAAATG ATGCCAATCC TGATGCTTCG CCAACGGTGG CTAGTTTGCC CGATGGGGTT
TGGATGGGTG CACGCGATTT AGGCAATGGC GCGGTGGCGT TTGGCCTTTA TGCACCATGG
AAGCAGAGTG TTCATTTAAT TGGCTCGTTT AACGATTGGA ACCAAACCGC TGATCCATTA
AATATTTCGG ATCGCGGGAT TTGGTGGATT ATCAAAGAAG GTTTAGCAGC TGGCGAATAT
GCTTATCAAT TTGTGATTGA CGGCGAGACG ATCATCGGCG ACCCCTATGC CCGTGAATTG
CGTTGGGCTG GTGGCGATCA GCCACAGGCG ATTATTCATG TTGGCGAGCC AGCCTACGAG
TGGCACGACG ATGGTTTTGG CATTCGTCCG CTGAATGAAT TGGTGATTTA TGAATTGCAT
GTTGGCGATT TTAGCGAGGC TGGCACCTTC AAAGCCGTCA CTGAACGAAT TCCTTATCTT
CAAGATTTAG GGGTGAATGC GCTTGAATTA ATGCCGTTGT TTGAGTTTCC TGGCGATCGT
TCGTGGGGCT ATAATCCGGC CTATTTCTTT GCTCCCGAAT CGACCTATGG CACGCCTGCC
GATTTGCGCG AGTTGATCGA TACGGCCCAC CAACATGGCA TTGGGGTGAT TTTGGATGTA
GTGTTTAATC ATGTCGATCA CTCTAGCCCG ATTAACTATT TGTATCCCTA CGATCAAAGC
CCTTTCTTTA GCAGCGACGG CAACCCGTGG GGCTTCCCCG ATTTGAACCA TTGGAATGAA
GCAGTCAAAC AATTAATCAG CGATGTGCAA ACCTATTGGC TCAGCGATAT GCACATCGAT
GGCTTTCGCT ACGATCACGC CGAGGGAATT GGCTTTGATG GCGAGAATGG GGTTTCGTTC
TTGGGCTGGC AGGCTCGCCA AATCAAACCG CATGTCTATT TGATTGCCGA AAATCTCAAA
GATTACACCA CCATGGTTGA TCAAACTGAT ATGGATTCGT CGTGGCATCG TTCGTTTCAT
TCGCAAATGT TTGCCAACTT GCGCGAAGGT GATTTCGAGG GCAATCAGTA TGGCAATGTT
GAGGCCACGC TGGGGATTAT CGATTTTCGC AATGCTGGCT ACAACGATAA TGCCCAAGCG
ATCAATTATC TTGAATCGCA CGATGAGCAG CGGATTGTTT ACGAGGCCCA AACCAACGAA
AATATCAGCC GCGAAACCGC TTATTTGAAA TCGCGACTGG GCGCGATTGT GCTATTTACC
GCTGCTGGTG TGCCCATGCT ATATCATGGC CAAGAATTTG GCATGGATAC CGAACGTACA
ATCGACAAAA ATATGCTGAA ATGGGAGTTA TTGCAAACAG CTGAGGGCAC TGATTTGCAC
GCCTTCTATC GTGGCATGAT TCAATTACGT ACCTCATCGA AGGCCTTGGT TGGCAATAAT
ATCCGGCCTG TCGCCATGGA TGCTGAGCGC AAATTGTTGG CCTACTATCG CTGGGCCGAC
GATGGCAGCG AACATGTGAT TGTTGTGGTG AATTTTGGCA TCACCCTGCA ATACCTTGAT
GTGCATTTCC CGGTTGGTGG TTTATGGCAC GAATGGGTCT ATAACTACGA TCGTGAAACC
CCTGAAGGTA TGGCCACAAT CGAAGTGCCT GGCTCAGGTG GGAAGGTCTT TGTGTTGCGC
TAA
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| Protein sequence | MQNDANPDAS PTVASLPDGV WMGARDLGNG AVAFGLYAPW KQSVHLIGSF NDWNQTADPL
NISDRGIWWI IKEGLAAGEY AYQFVIDGET IIGDPYAREL RWAGGDQPQA IIHVGEPAYE
WHDDGFGIRP LNELVIYELH VGDFSEAGTF KAVTERIPYL QDLGVNALEL MPLFEFPGDR
SWGYNPAYFF APESTYGTPA DLRELIDTAH QHGIGVILDV VFNHVDHSSP INYLYPYDQS
PFFSSDGNPW GFPDLNHWNE AVKQLISDVQ TYWLSDMHID GFRYDHAEGI GFDGENGVSF
LGWQARQIKP HVYLIAENLK DYTTMVDQTD MDSSWHRSFH SQMFANLREG DFEGNQYGNV
EATLGIIDFR NAGYNDNAQA INYLESHDEQ RIVYEAQTNE NISRETAYLK SRLGAIVLFT
AAGVPMLYHG QEFGMDTERT IDKNMLKWEL LQTAEGTDLH AFYRGMIQLR TSSKALVGNN
IRPVAMDAER KLLAYYRWAD DGSEHVIVVV NFGITLQYLD VHFPVGGLWH EWVYNYDRET
PEGMATIEVP GSGGKVFVLR
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