| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_0460 |
|---|
| Symbol | |
|---|
| ID | 5732359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 536839 |
|---|
| End bp | 538194 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641277586 |
|---|
| Product | MATE efflux family protein |
|---|
| Protein accession | YP_001543239 |
|---|
| Protein GI | 159896992 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0534] Na+-driven multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACAG CTAGCATTGA AAAATTAGGA ACCGCTCCCA TCGGCAAGTT GCTATTAGCG
ATGTCGTCGC AAACCACCAT CTCGCTGTTG GTCTATACAA TTTATAGCAT CACCAATACC
TATGTACTTT CGATTGGAAT TAATGGTTTA GCGGCGGCGG GTGCTGCAAT TATCGCGCCG
GTGCTCTTGG CCTTGGGAGC AGTTTCAACT ACGGTTGGTG CTGGCGGAGC TTCAGTTGTT
TCACGCGCCT TGGGAGCACA TCAGCCCGAT CGAGCAGCGC GAGTTGTTGC CAATACCTTC
ATTATTTTTT GGGCGGCGGC ACTCATTATC AGCGTGATTG GCACGTTGGC AATTGAGCCA
ATTGTCTATT TGTTGGGCGC GACCGAAAGC ATTGCGCCCT ACGCCATCGA CTATGGTCGC
ATCATCTTTT TGGGCGCAAT TACTAGCACA GGCTACTCGG CAATTATCCG CGCCGACGGC
AATACCGGCT TTTCAACCGC GATCTGGATC ATTCCGGTTA GCCTGACGAT TGGATTTTGG
TGGTTGTTGG TGATTGTTTT TCCGCTGGGT ATGACAGGTG CAGCCATTGC GACGGTGCTT
GGGCAGGCTG CTTCAGCTGG CATGAGCATC TATTTTTTCT TTTTTCGCAA ACAACGCTCA
TATAACATAC GACTGAGCTA CTTTAAGCCC GATTGGGCGA TTATGCGCGA AATTTTGCTG
ATTGGCTCGC CCTCGCTGAT TAAAAATCTC AGCGCTAGCA TTATGGCAAT TGTGACCAAT
AATCTGTTGC GAACGCTTGG CGGCACTAGT GCTTTGAGCG TTTTTGCGAT TGTTGGCAGC
TTGTACAGCG GCTTGATGAC ACCGCAAACT GGAATTATTC AAGGCATGCA GCCAATTGTC
GGCTATAATC TTGGGCAGCG CAATCTTCAG CGCGTATGGC AAACAATTAA GCTTTCGCTG
CGAGCAGCGG TTGGCTATGG CCTACTGATT AGCAGCATAT GCTTGATCAT TCCTAGTGGC
TTGATTTCGC TGCTCTCGCA TGACCAAGCC TTGATTGCCG AAGGCCAAAC TGCCTTGCGT
TTGTTAGCAC TGGCCTATCC ATTAACCGGA ATTTCGCTGG TCAGCGCGGC GGCCTTACAA
GCGGCAGGCT GGGCCAAACA AGCCCTATTG CTGCTAGTTG GCAGCATTAT TGGCATTAAA
CTGCCCATTT TATTGCTTGG CTCACAGCTA TTTGGCCTAA ATGGCATTTG GGCCGCCGAA
GCTATTTCAG AATTATTGCT CTGTGGCGCA GCTTTTTGGT TGCTGAACAA ACTGCGCCAA
CAAACCTATC AGCCACTTGG TCCAGAAGGG AATTAG
|
|---|
| Protein sequence | MATASIEKLG TAPIGKLLLA MSSQTTISLL VYTIYSITNT YVLSIGINGL AAAGAAIIAP
VLLALGAVST TVGAGGASVV SRALGAHQPD RAARVVANTF IIFWAAALII SVIGTLAIEP
IVYLLGATES IAPYAIDYGR IIFLGAITST GYSAIIRADG NTGFSTAIWI IPVSLTIGFW
WLLVIVFPLG MTGAAIATVL GQAASAGMSI YFFFFRKQRS YNIRLSYFKP DWAIMREILL
IGSPSLIKNL SASIMAIVTN NLLRTLGGTS ALSVFAIVGS LYSGLMTPQT GIIQGMQPIV
GYNLGQRNLQ RVWQTIKLSL RAAVGYGLLI SSICLIIPSG LISLLSHDQA LIAEGQTALR
LLALAYPLTG ISLVSAAALQ AAGWAKQALL LLVGSIIGIK LPILLLGSQL FGLNGIWAAE
AISELLLCGA AFWLLNKLRQ QTYQPLGPEG N
|
|---|
| |