Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HY04AAS1_0078 |
Symbol | |
ID | 6742861 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Hydrogenobaculum sp. Y04AAS1 |
Kingdom | Bacteria |
Replicon accession | NC_011126 |
Strand | - |
Start bp | 70234 |
End bp | 72216 |
Gene Length | 1983 bp |
Protein Length | 660 aa |
Translation table | 11 |
GC content | 36% |
IMG OID | 642749862 |
Product | general secretion pathway protein D |
Protein accession | YP_002120748 |
Protein GI | 195952458 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 59 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGATTT TAAGAAAAAT AAATTGTTTG AATATATTTT CCGTTTTATG GATTTTTATA GTGTTTGGAA TGGCCCATGG AAAGGGAAAA ACCAAATACT TAAACAACAT GGTAGTACTA AACTTCCAAA ACCAAAGCAT AGATGATATA GCAAAGTTTA TGTCAAAGCT TACTGGTAAA ACTATAGTGA TAGGGATAAA GGGAAATCTT CCTAAAATAA CGGTTAGCTC CAAAAAACCT GTAAGCGTAG AAGACGCTTG GCATCTTTTT TTAACGAGCT TAGCTTTAGA TGGGTACACT GTTGTAAAAT ATAAAAACTT TTACAAGATA CTTCCTCTAA AAGAAGCATC TTCTTTTAGC ACAAGTGTTA CAAAAAAAGC CTTTCCAAGC CCCTCTATAG AAACCTACAT TTACTTTGCC CATACAAACT CCCAAATACT TCTAAATGCC GTAAGACCTT TTTTAAGCCA ATATGGTAAC GCCACCGTTT ATATGCCCTC AAACGCCCTT ATCATATCTG ATATAGGAGT GTCTGTTGAT AAAATCCAAA AACTTTTAAA GAGTATAGAT ATACCAAATT TAGCTTTTAG TCTAAAAATG TATCAAACAA AAGATACAAA CGCCGTTGTA AAAGCCCTAA GCCCCTTGGC AAACCCTGTA AGTCAAAAGT TTGGTATACC TATGGTGGTA TCTTCTGTTC AGAAAAAACA CTCCAAAAGC GGTTTTGTGC TTGTATATGC ACCGAAGCTT ATGCAAGCCT CTATAAAAGA GATTATACAT AAAATAAACG AAAGCGCCTC TCATTTTAGA AGACATTATT ATGTTATCCC ACTTCAAAAC GCCTCTGTAG GAGAAATGGC AAAGACGTTG GCAAGCCTTT TTGGAAGCGC AAGCGCCATT TCCTCTACCA CAAAAAGACC TACACCAAAC CTAAACACTA TGCAAAACCA ACCTCAAACA ATTCAAAGCA ACGTACCTCC AAATCAAAAC ATAAACGTAA TATCTTCCAA CAAACCAATA GGCTCTATAT ATCTTTCTGA TGGCACGAGG ATAGGTTTTG ACAGAGCCAC AAACAGCGTT ATTTTATACG CCACAAAATC TCAATACGAA AATCTAAAAA ATCTCATAAA AAAACTAGAC GAAAAACGCA TTCAAGTGCT GATAGCGGCT TCTGTAGTGG AGGCAAACCT CACCAAACAA CTTACCACCG GTGTAAATTG GCAAGCTTTG GGCAAAAATG GCGGTATAGG ATTTAACCCG GCATCTCTTC AAACCATATA CCAAGGGCTT TTATCTGGAA ACTTCGTAGT AGGTGTTACA AGCTCAAGCA GTATAAGTGC AAACGTAGGT GGTAATACAA TCATATTTCC TGATTTAGCG GTATTTTTAA GTTTGTTAGA GCAAGGAAAT GGTTTTAAAA TCATATCAAA CCCAAAGGTG CTAACCCTTG ACAACGAAGA GGCTATTATA AAAGAAGCTC AAGTTTATCC TTATGTAACA GGTACCCAAT ACAACATAAA CGGCTTCCCA ATACTCACTT ACGACTACAA AGATATAGGC CTAGAGCTTG ATGTTATACC TACTGTTTCA AAAGACAACA TAAGGCTTGG CATAAACTTA AATCTTCAAG ATATCACGGG CTTTACAAAT ACAAACGTAG CGGGTCAAAC GGTGCCTATA CCTATTACCA CAGATAGAGT TTTAAATTCG GAAGTAGTCG TTAAAAGCGG TCAAACGGTG ATATTAGGAG GACTCGTGAG CAACAACACT ATAAAAAACA TAAGCGGTAT ACCAATTCTT CAAGATATCC CAGTTTTAGG AAATCTCTTC AAATATCAAA ACAGAGAAAA TAAAAAAAGC ACTCTTTTTA TATTTATAAC ACCTTACATC ATAAAAAGCC CAGATCAACT TGCCAAAATT ACGAAAGCAA ATGAAGTAAT AGCGCACAGA ATATACGAAA GTGTGAAAAA AGCAAAAGAA TAA
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Protein sequence | MKILRKINCL NIFSVLWIFI VFGMAHGKGK TKYLNNMVVL NFQNQSIDDI AKFMSKLTGK TIVIGIKGNL PKITVSSKKP VSVEDAWHLF LTSLALDGYT VVKYKNFYKI LPLKEASSFS TSVTKKAFPS PSIETYIYFA HTNSQILLNA VRPFLSQYGN ATVYMPSNAL IISDIGVSVD KIQKLLKSID IPNLAFSLKM YQTKDTNAVV KALSPLANPV SQKFGIPMVV SSVQKKHSKS GFVLVYAPKL MQASIKEIIH KINESASHFR RHYYVIPLQN ASVGEMAKTL ASLFGSASAI SSTTKRPTPN LNTMQNQPQT IQSNVPPNQN INVISSNKPI GSIYLSDGTR IGFDRATNSV ILYATKSQYE NLKNLIKKLD EKRIQVLIAA SVVEANLTKQ LTTGVNWQAL GKNGGIGFNP ASLQTIYQGL LSGNFVVGVT SSSSISANVG GNTIIFPDLA VFLSLLEQGN GFKIISNPKV LTLDNEEAII KEAQVYPYVT GTQYNINGFP ILTYDYKDIG LELDVIPTVS KDNIRLGINL NLQDITGFTN TNVAGQTVPI PITTDRVLNS EVVVKSGQTV ILGGLVSNNT IKNISGIPIL QDIPVLGNLF KYQNRENKKS TLFIFITPYI IKSPDQLAKI TKANEVIAHR IYESVKKAKE
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