| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HS_1048 |
|---|
| Symbol | potD |
|---|
| ID | 4240546 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Haemophilus somnus 129PT |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008309 |
|---|
| Strand | + |
|---|
| Start bp | 1155218 |
|---|
| End bp | 1156255 |
|---|
| Gene Length | 1038 bp |
|---|
| Protein Length | 345 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 36% |
|---|
| IMG OID | 638104609 |
|---|
| Product | spermidine/putrescine-binding periplasmic protein |
|---|
| Protein accession | YP_719260 |
|---|
| Protein GI | 113461191 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.00610599 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGACTAAAA TGACTTTAGC TAATCTGATT TTACTCGGAG CGATTCAAAC AGCGAATGCC
AGTGATAATA CTGTGTATCT TTATACATGG AGTGAATATG TCCCTGAAGG ATTATTAGAA
AACTTTACTA AGGAAACAGG CATTAAAGTT ATTGCATCCA GTTTAGAATC CAATGAAACA
ATGTATGCCA AGCTAAAAAC GTTGGGGAAA AACAGTGGAT ATGATGTTAT TGCACCGACC
AGCTATTTTG TGTCTAAAAT GGCAAGAGAA GGTATGTTAA AGGAATTAGA TCACAGTAAA
CTTCCTGTAA TACAGGAACT TGATCCTAAT ATGTTAGATA GACCTTTTGA CAAAGGTAAT
AAATACTCTC TTCCACAACT ATTTGGTGCA ACCGGTATTG GATACAACGC TGACAATCAA
AATCCGGAAC ACCTTCAATC TTGGGGTGAT TTATGGAACC CTGAATTTGC AAATAAACTG
CAAATGCTAG ATGACCCAAG AGAACTATTT AATATTGCAT TACTAAAAAT GGGGGAAAAT
CCAAATACCC AAGATCCAAA GGTAATAGAA AAAGCCTATC AAGAATTATT AAAGCTACGT
CCTAATATTT TAGTTTTTAA CTCTGATAAT CCCGCAAATA CCTTTATTAC CGGTGAAACA
GATGTCGGCT TGATTTGGAA CGGATCTATT CGTGTCGCAC AAAATGCAGG CGTACCGATT
AAAATTGTTT ATCCAAAAGA AGGAACCATG TTGTGGATTG ATAATTTAGC CATTCCAGCA
ACAGCTAAAA ATGTTGAATC GGCATACAAA CTCATCAATT ACCTGTTAAG TGCGGATGTT
TCCGAAACAT TAACGCTCGA AATAGGCTAT CCTACTTCAA ATCTCAACGC TCTCGAACGC
TTGCCAAAAG AATTAACCGA AAATAAAGGT ATCTTCTTAC CGCAAGAAGT GCTTGATCGA
AGTCAATGGC AAGTAGATGT AGGAGAGGCG GCTGAACTTT ATGAAACTTA TTATCAAAAA
TTAAAAAATA TGCAATAA
|
|---|
| Protein sequence | MTKMTLANLI LLGAIQTANA SDNTVYLYTW SEYVPEGLLE NFTKETGIKV IASSLESNET
MYAKLKTLGK NSGYDVIAPT SYFVSKMARE GMLKELDHSK LPVIQELDPN MLDRPFDKGN
KYSLPQLFGA TGIGYNADNQ NPEHLQSWGD LWNPEFANKL QMLDDPRELF NIALLKMGEN
PNTQDPKVIE KAYQELLKLR PNILVFNSDN PANTFITGET DVGLIWNGSI RVAQNAGVPI
KIVYPKEGTM LWIDNLAIPA TAKNVESAYK LINYLLSADV SETLTLEIGY PTSNLNALER
LPKELTENKG IFLPQEVLDR SQWQVDVGEA AELYETYYQK LKNMQ
|
|---|
| |