Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1326 |
Symbol | |
ID | 8709168 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1583405 |
End bp | 1584742 |
Gene Length | 1338 bp |
Protein Length | 445 aa |
Translation table | 11 |
GC content | 37% |
IMG OID | 646483411 |
Product | hypothetical protein |
Protein accession | YP_003374512 |
Protein GI | 283783758 |
COG category | [R] General function prediction only |
COG ID | [COG1373] Predicted ATPase (AAA+ superfamily) |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGAATGA TTTTCAATCG TCAAAGTTAC ATAAGGAAAC TTAACCAGCT TAGTTGGAAT GGTCTGGTTA AAATCATTAC TGGTGTGCGC CGCGCGGGAA AGTCGTTCAT TCTTAACGAG CTGTTCTATA ATTCTCTTAT TTCTCAAGGT GTTTTGCAGA AGAATATTAT TCGGTTTGCC TTTGATGCAG ACGAAGATAT TGATCGTCTT GAGCCATTCG CAAATGGCGA GCCAGTAAAA ATCGCAGATA AAAAACTTGG CTACGTTATA AATGCTAAAG TGTTCCGTCG CTACATTGCG TCGCAAATAA ATGATAGTGA CAAGTTTTAC ATTTTCCTCG ACGAAGTGCA ATTGCTTGAT AATTTTGTTG GTACACTTAA CAGTTACTTA AGGCACGCAA ATTTAGACAT ATATGTTACT GGATCTAACT CCCGTTTTCT TTCATCAGAC ATTGTTACTG AATTTAAGGG GAGGAGCACA GAAGTTCACG TCCAACCCCT TACTTTTGCC GAATATGTGG AAAGTTCTAA CAAAACGGTT TCAGAATCTT GGGCAGATTA CATTGTTACT GGCGGAATAC CGCTTGTAGC TAGAATGCAA AATGTTGAGG AACAAATAAA CTACCTTGAA AATCTTGTTA AAGAAACTTA TTTGAAAGAT GTAGTTCAGC GAAACGGCGT GCGAAAAGAA CAGGCTCTTT CTGAAACTTT GCAAGTAATA GCTTCATCAA TAGGCGCTCC TGTTAATCCA AGGAAACTTT CTAACACGTT TATTAGCCAC GGATATGGGG AAATTACTTC AGCAACTGTT AGTCGTTTCA TAGACTACTA CAGCGATGCT TTTCTTGTAA GCAAAGCTCA AAAGTACAAT ATTAAGGGCA AAAAATACAT TGATTCCTTG TTCAAAATTT ACTTTGAAGA CATTGGTGTA CGCAACGCTT TACTTAATTT TAGGCAAATT GAAGAGTCGC ATATTATGGA AAATGTTATA TACAACGAAT TAAGATATCG CGGATATAAC GTGGATATTG GCGAAATGAA TATTGCCGAA AATACTGGTC GAAAAGATAA AAATAACCAT GATATTTATG CGCAAAAATC TTTGGAAATA GATTTTATTG CTACTTTGGG AAGTGAAAAA TATTATATAC AATCTGCGCC CGCTATGCCA ACGGAAGAAA AATCATTGCG AGAGAAACGC TCGCTTTACT ATATTGATAA TTCCTTCAAA AAGATAGTAG TTACGAAAAA TGGATTGCAT GCTACAAGAG ATAATCGTGG GGTAGTCACC ATGGACCTAT TTGATTTTTT GCTTAACGAG GATAGTCTTA AGCGGTGA
|
Protein sequence | MRMIFNRQSY IRKLNQLSWN GLVKIITGVR RAGKSFILNE LFYNSLISQG VLQKNIIRFA FDADEDIDRL EPFANGEPVK IADKKLGYVI NAKVFRRYIA SQINDSDKFY IFLDEVQLLD NFVGTLNSYL RHANLDIYVT GSNSRFLSSD IVTEFKGRST EVHVQPLTFA EYVESSNKTV SESWADYIVT GGIPLVARMQ NVEEQINYLE NLVKETYLKD VVQRNGVRKE QALSETLQVI ASSIGAPVNP RKLSNTFISH GYGEITSATV SRFIDYYSDA FLVSKAQKYN IKGKKYIDSL FKIYFEDIGV RNALLNFRQI EESHIMENVI YNELRYRGYN VDIGEMNIAE NTGRKDKNNH DIYAQKSLEI DFIATLGSEK YYIQSAPAMP TEEKSLREKR SLYYIDNSFK KIVVTKNGLH ATRDNRGVVT MDLFDFLLNE DSLKR
|
| |