| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1316 |
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| Symbol | |
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| ID | 8709118 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1572231 |
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| End bp | 1573502 |
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| Gene Length | 1272 bp |
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| Protein Length | 423 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646483403 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_003374504 |
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| Protein GI | 283783750 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAAAC TTACAAAAAT ATGTGCACTG ATTGGTGCTG CTGCAATGAT TATTAGCGTA
AGTGCGTGCG GTAGTACAAA ATCGTCCGAC GCTAATGGTG CAACATCGCT TACCATTTGG
CATTATTGGG ATGGTGCTAA TGCTGATACC TTTGATGCAA TGGTGAAGGA TTTTAATGCT
TCGCATAAAA ATATTAAGAT TAAGACTGCG AGCGTCCCGA ATTCTGATTT TATGACGAAG
CTTCGTGCAT CGGCTTCGTC GAAGAGTTTG CCAGATATTT CTATAAGTGA TTTGGTATGG
GTGCCACAGA TTGCAAAAAT GGGCAATTTG ACTGATCTTT CTAAGGTTAT CAGCTCGAAA
ACGCTCGATG ATGTTACTCC TGCATTGATT GACTATGGTC ATATTGACGG CAAACAAGTT
TCTGTGCCAG TGACTGCCAA TAATCTTGCG TACATGTACA ACAAGGATGT TTATAAAGAA
GCTGGGTTAG ATCCTAACAA GCCACCGCAA ACATGGGATG AGTTGAAGAA AGTTGCCAAG
ACAATCAAGG AAAAGACGGG CAAGCCAGGG TATGATTTGC TTACTCAAGC AGGAGATAAC
GGCGAAGGTT TAACTTGGAA CTTCCAGGTC AACTTGTGGC AAGCTGGTGG CGAATTCTTG
ACGAAGGATA ATTCTAAGGC TGCATTCAAT ACGCCAGAAG GCAAGAAGGC TATGAACTTC
TGGATGGATC TTATCAAGAG CGGCGTGAGC CCATATGCTA AGTGGGGCGA ATTTGAAAAG
GGCAAGGGTG GTTCTGCTCA GGAAGGTAGC TGGATGGTTG GCATCTGGGC GCCAGATCCA
CCATTTGATT TCGGTGTAGC AAAAGCCCCT CATCCAAAGG ATGGTAAGGA GGCAACCAAT
CTCGGTGGTG AACAAGCAAT CGTCTTCCAC AATTCTGACG CTCGTGCCAA GGCTGCTGGC
GAGTTCTTGA ATTGGTTCTT GCAGCCAGAA CAGGTGATCA AGTGGTCGCA AAAGACTGGC
ATGCTTCCTG TAACGAAGAG TGTTGCAAAG TCTGATAAGT ATTTGGATTG GGTTAAGAAG
GAACAGCCTC GTTTAATTCC GTTTGTGGAA CAAATGGAGA TTGCTCATAC ACGTCCAAAT
ACGCCATTGT ATCCAAAGAT TTCCTTCGAA TTTGCAAAGG CTGTGGAGAA GGCTTTCGCT
GGAGAGCAGA GTGTTGACGA AGCGCTTGCG AATGCTGAAA AGGCAGTAAA CGACGTGATT
GCCAAAGGCT GA
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| Protein sequence | MKKLTKICAL IGAAAMIISV SACGSTKSSD ANGATSLTIW HYWDGANADT FDAMVKDFNA
SHKNIKIKTA SVPNSDFMTK LRASASSKSL PDISISDLVW VPQIAKMGNL TDLSKVISSK
TLDDVTPALI DYGHIDGKQV SVPVTANNLA YMYNKDVYKE AGLDPNKPPQ TWDELKKVAK
TIKEKTGKPG YDLLTQAGDN GEGLTWNFQV NLWQAGGEFL TKDNSKAAFN TPEGKKAMNF
WMDLIKSGVS PYAKWGEFEK GKGGSAQEGS WMVGIWAPDP PFDFGVAKAP HPKDGKEATN
LGGEQAIVFH NSDARAKAAG EFLNWFLQPE QVIKWSQKTG MLPVTKSVAK SDKYLDWVKK
EQPRLIPFVE QMEIAHTRPN TPLYPKISFE FAKAVEKAFA GEQSVDEALA NAEKAVNDVI
AKG
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