| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1314 |
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| Symbol | |
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| ID | 8709160 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1570420 |
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| End bp | 1571241 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 41% |
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| IMG OID | 646483401 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_003374502 |
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| Protein GI | 283783748 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0395] ABC-type sugar transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAATCAT CATTATGGTC GCGTTTGGCG CGTCATGCGA TTCTGATTTT AGGTTCAGCA
ACAGTAATCA TTCCATTTTT GTGGATGTTC ACTACTTCTT TGCAAATGCG TGCTGAAACA
TACACGAATA CTTCAATTTT TCCCACATCA TGGCATTGGG AAAACTATAT TCACGCTTGG
CAAGCTGCGC CGTTTGCACA ATATTACTGG AATACGCTAT TGATGACAGT AGGAATTGTT
GTAGGACATT TAATATTTGA TGCCTTTGCT GCCTACGCTT TTGCGCGCTT AGAATTTCCT
TTGAAGAAAA CAATATTCAT TCTGCTGCTT TCTGCATTGA TGATTCCTAA TTTTGTGATT
GTTATTCCGT CCTATGAGAT AGTCGCTAAT TTGGGGTGGG TTGATACGCT GTATGCTTTG
GTTGTTCCTA GACTTGCAGA TGTGTTTGGC ATTATTTTAC TTCGCCAATA TTTTGCAACA
ATTCCTCGAG AGCTTGATGA GGCAGCGCGC ATTGACGGTT GTGGCAGGTT TGGAATATTC
TTCAAACTGA TTGTTCCATT GTCATATCCA GCGTTTGCGA CGCTTGGTAT TTTCAGTTTT
CTCTTTGCAT GGAATGATTT CCTTTGGCCG TTATTGGTTA CGAATACGGA TGAAACTCGT
ACAATCCAGA TTGGTTTAGC ATCCTTCGTA GGGCGTTATG GAACCTCTTG GAATTATTTG
ATGGCAGGAA CTTTGACTGC AACAATACCA AGTATCATTG TGTTCCTTTT CTTCCAACGT
GCGCTCGTTA GAGGAATTGC AAATACGGGT ATGAAAGATT AG
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| Protein sequence | MKSSLWSRLA RHAILILGSA TVIIPFLWMF TTSLQMRAET YTNTSIFPTS WHWENYIHAW
QAAPFAQYYW NTLLMTVGIV VGHLIFDAFA AYAFARLEFP LKKTIFILLL SALMIPNFVI
VIPSYEIVAN LGWVDTLYAL VVPRLADVFG IILLRQYFAT IPRELDEAAR IDGCGRFGIF
FKLIVPLSYP AFATLGIFSF LFAWNDFLWP LLVTNTDETR TIQIGLASFV GRYGTSWNYL
MAGTLTATIP SIIVFLFFQR ALVRGIANTG MKD
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