| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1295 |
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| Symbol | |
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| ID | 8709678 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1547335 |
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| End bp | 1548564 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646483382 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_003374483 |
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| Protein GI | 283783729 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2182] Maltose-binding periplasmic proteins/domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAATA TTAAGAAGAT GCTGGGTGCA GGTCTTGCAG TTGCTACTTT GTTTGGATTT
GCAGCTTGCG GTTCAAGCAC TAACAATAGC GCTAAGAAGG CTGCTGATTC AGCACCTGTT
CAGCTCACCG TTTGGGGTTC TGCTGACGAT CAGAAAGATG GCGGCTGGAT TAAGACTGTT
GAAGCAGAAT TCAAGAAGGA AAATCCAAAC GTTACTTTCA AGAACGCTGT TGTTGAGCCA
CCAGACGCTG CTAAGGCTGT TAAGCAGGAT GCTAAGGCTG CTGCTGATGT GTTCCTCTTC
CCTAACGATC AGCTCGGCGA CTTGGTAAAG GCTGGAGCAA TCGGCGAATT AAGCGATGAC
GCCACAAAGC AAGTTAAGGA ACAGAACGAA GATACTTTGA TCAAGTCTGT TACCGCTCAG
GACGGTAAAC TTTACGGCGT TCCTTACACC GGCAACACTT GGTTCATGTA CTACAACAAG
TCCAAGTTCT CCGCTGATGA CGTTAAGTCC CTCGACAAGA TGCTTGAAAA GGGCAAGGTT
TCATTCGATC TTGCTAATGC TTGGTATCTC CCAGGCTTCT ACCTCGATGG CAATATGACG
CTCTTCGGCG AAAATGGAAA CGATGCTAAG GCTGGCATGA AGCTCAGTGA TAAGGCTGCT
GAAGTTACCA AGTACATTGC AACAAAGCTC GTTGGAAACG AAAAGCACTT CGTACTTGAT
GGAAATGGTC GCGGCTTGGC TGGCTTGAAG GACGGCTCCG TTGATGCAAT GTTCTCCGGT
TCTTGGGATG CAGCCAAGGT TAAGGACGCC TTGAAGGATA ACTATGCTGC AGCTGCTCTT
CCAACCTTCA AGACTGAGTC TGGCGAGCAC CAGATGAAGT CCTTCGCTGG TTCTAAGGCT
GTTGCTTACA ACACCAACAC CAAGTCTCCA GAGATGGCTG CTAAGTTCGC TGCATTCTTG
GGCTCCAAGA AGTCCCAGCA GATTGCTTTC GAAAAGGAAG GTGCAATTCC TTCTGACAAG
TCCCTTGCTG ATAGCGTAAA GGCAGAGCCA GCTGCTGTTG CTCAGATGGA AACCATTGCT
AAGACTTCTG TCTTGCAGCC AGCAATTCCT GAAATGGGTA AGTTCTGGGA TCCAGTTCAA
GCATTCGGCA CTTCTATCTC CACCGGTAAG ATTACTGGCG ATAATGCTGC CGCGCAGACC
GCAGAATTTG CTAAGGGCTT AGAGAAGTAA
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| Protein sequence | MTNIKKMLGA GLAVATLFGF AACGSSTNNS AKKAADSAPV QLTVWGSADD QKDGGWIKTV
EAEFKKENPN VTFKNAVVEP PDAAKAVKQD AKAAADVFLF PNDQLGDLVK AGAIGELSDD
ATKQVKEQNE DTLIKSVTAQ DGKLYGVPYT GNTWFMYYNK SKFSADDVKS LDKMLEKGKV
SFDLANAWYL PGFYLDGNMT LFGENGNDAK AGMKLSDKAA EVTKYIATKL VGNEKHFVLD
GNGRGLAGLK DGSVDAMFSG SWDAAKVKDA LKDNYAAAAL PTFKTESGEH QMKSFAGSKA
VAYNTNTKSP EMAAKFAAFL GSKKSQQIAF EKEGAIPSDK SLADSVKAEP AAVAQMETIA
KTSVLQPAIP EMGKFWDPVQ AFGTSISTGK ITGDNAAAQT AEFAKGLEK
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