| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1289 |
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| Symbol | |
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| ID | 8709476 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1539731 |
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| End bp | 1540642 |
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| Gene Length | 912 bp |
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| Protein Length | 303 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646483376 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_003374477 |
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| Protein GI | 283783723 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0395] ABC-type sugar transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTAATA AAACGGAAAC GGCGGAAGTT GTTGTTACGG CGCAGCCTAA TGGGGGTATT
GTGAAAAAAT TACGTAACCG CGCAAGAAAC AGCACTCGTC ATGCTGTGTT GAGTTGGTCT
CTTACTATTT TTCTTTTTCT GCTTTCTGCG CTAACAATTA TTCCATTTGT ATGGATGTTC
ATTTCTTCAT TTGCACCAAA TAGTGATATT GTTCGCGTCG ATGGTGGACT ATTCCCTATG
CCTAGTACGT TTGATAACTA CGTTGGTATT CAGGAAAAAT TTGATTTCTT GAGATTATTC
TGCAACTCGT TGTTTGTTGC TGTAGCAAAA ACGGTAATTG CCATTTATAC CAGCGCAGTG
TTGGGATATG TATTTGCAAA AATGCGTTTC CGTTGCCGTA ATTTGCTTTT TGGTATAGTG
ATGAGTACCA TGATGGTTCC GTGGGCTGTA ACTATTATTC CGCAGTACGA TATGATGACA
AGTTTCGGTT GGCAAGATAC GTACCGAGCC TTAATCGTTC CAGGATTAAT TAGTGCTTTT
GGTATTTTCC TCTTCCGCCA GTCAATAACA GGCATTTCTG ACGAACTCAT TGAAGCTGCG
AAACTCGACG GAGCATCTGA TTTTCGTATT TTCCACAGTA TTATCCTTCC TATGAGCCAT
AACACGATTG CGGCGCTTGC CATCTTTACT TTCTTGTGGA ACTGGGAAGA CTATCTGTGG
CCGTTCTTGA TGATTTCGGA CGAGAAGAAG CAGCTGCTCG CGGTGGGCTT GAAGGTATTT
AGTGGGCGAT ATGGCACTGA TTATGGTGGC TTGTTTGCAG CGACTTCTTT GGCGATTGTG
CCAGTTATTA TAGTGTACGT AATTTTCCAA AAGCAGTTTA TTGCCGGTAT TTCCACTGGT
AGCGGTAAGT AA
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| Protein sequence | MSNKTETAEV VVTAQPNGGI VKKLRNRARN STRHAVLSWS LTIFLFLLSA LTIIPFVWMF
ISSFAPNSDI VRVDGGLFPM PSTFDNYVGI QEKFDFLRLF CNSLFVAVAK TVIAIYTSAV
LGYVFAKMRF RCRNLLFGIV MSTMMVPWAV TIIPQYDMMT SFGWQDTYRA LIVPGLISAF
GIFLFRQSIT GISDELIEAA KLDGASDFRI FHSIILPMSH NTIAALAIFT FLWNWEDYLW
PFLMISDEKK QLLAVGLKVF SGRYGTDYGG LFAATSLAIV PVIIVYVIFQ KQFIAGISTG
SGK
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