| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1288 |
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| Symbol | |
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| ID | 8708772 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1536873 |
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| End bp | 1539620 |
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| Gene Length | 2748 bp |
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| Protein Length | 915 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646483375 |
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| Product | glycosyl hydrolase, family 31 |
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| Protein accession | YP_003374476 |
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| Protein GI | 283783722 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1501] Alpha-glucosidases, family 31 of glycosyl hydrolases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGTAG TAAATATGAG CAAGCAAGAT AAATCACAAA TTATCGGTGA AGCTGTGGCG
TATTCGGATT CGCAATCTCA AATTTTTGCT GACGTTGCAA ATTCGCAGTA CGCAAAGGCG
CAGGATAGTC AGGTAATTAA GGGCGAAAAG TGGCGAATTA CGGTTATTAC GGATTCTCTT
ATTCGTCTTG AATGGAGCGA TGATGGAAAG TTTGTTGACA ATCCTACGCA AACTGTGATT
TGTCGCAATT TTGCTCAGAA GAGCGTGGAC GCTCAGCCGC AATTTAGTGC GCGCACAAAC
GAAAATGAAT GGCTGGAAGT CGAAACTGAA AAGCTTCACC TTACTTATAA TTGCGAAGCT
TTTAGCAAAG AAGGTTTAAG TATTGTTGTG CGCGGAGTGC CGTGCACGCA GTTTAATACG
TGGCATTACG GCGACGCGTG CCCGGGAAAT CTTCTTGGAA CTTTTAGAAC TTTGGATCAG
GCGAATGGCC CGGTAAAACT TGGTAAAGGA ATACTTTCGC GCGACGGATG GTCTATTTTA
GACGATTCTG CAACTTGCGA AATTGCTCCG GCTGAGGAAA TAAATGGCAA ACCAAACCCG
TATGGGGCTT GGGTTAAGTC GCGTGCGCAA AAAGTTAGCG AGCAATCAGG CAGATACAAG
GACTTGTATT TCTTCGGTTA TGGACACCGC TATATTCAAG CAATTCAAGA CTTTTATAAG
CTTACGGGCG CTCAGCCGCT GCTGCCACGT TTTGCGCTAA GCAATTGGTG GAGCCGCTAC
TATCGCTACC GTCAAGACGA ATATTTGCAA TTGCATAATC GTTTTAAGCG CGAAGGCATA
CCTTTTAGCA CGGCTGTTAT TGACATGGAT TGGCATGTGA CTGATGTTGA TCCGAAGTAT
GGATCCGGTT GGACGGGCTA TACGTGGAAC GAGGAACTTT TCCCGGATCA TCGTGCTTTT
TTGCGTAAAC TTAACGCTGC TGGATTGTCT CCAACTTTGA ACTTGCATCC GCGCGACGGC
GTGCGTGCGT TTGAAAAAGA TTATCCGCAA GTTGCGCAAG ATGCTGGCAT TGATCCGGCA
AGCGGCAAAG CTGTGGAATT TGATTTAACG AACCCGCAGT TTGTGAAGGC TTACTTCAAC
ATGCATCATC GTATGGAAGA TGAAGGTGTG CGATTTTGGT GGATTGACTG GCAGCAGGGG
GGAGTGACGC GCGAGCCTGG CTTGGATCCT CTTTGGATGC TGAACCACAT GCATTATGAG
GACGCTGCGC GCGAAGGTCG CTGGCCTATT ACGTTCTCTC GTTATGCTGG CCCTGGTTCG
CATCGCTACC CAGTTGGATT CTCGGGAGAT ACCGTTACTA CTTGGGATTC CCTTGCTTTC
CAAACGTACT TCACTTCTAC AGCTTCAAAT ATTGGCTACG GATGGTGGAG TCACGATATT
GGCGGACACA TGCTTGGCGT TAGAAATAAC GAGTTGGAAG CGCGATGGTA CGCTTTCGGC
GCGTTTAGTC CTATTAATCG TTTGCACTCG ACTTGCTCAC CGTTTGCTGG AAAAGAGCCG
TGGAATTTCC CTCAGGAAAC TCGCGAAGCA ATGGTGAAAA TGCTTCGATT GCGCGCGGAA
CTCTTGCCAT ACGTTTATAC GATGAATTAT CGTGCAGCTT TTGAAGGCAG GCCGATTATT
GAGCCAATGT ACTGGCAGTC GCCGGAAGTT GGCATGGCTT ACGAAATTCC TAACGAATAC
CGTTTTGGAA GCGAGCTTAT AGTAGCACCG ATTGTTTCGT CTAACGATGC GGCTGCTTTG
CGCGGATGTG CTGGAGTTTG GTTGCCGGAA GGCGATTGGT ACGATTTGTT TGACGGACGC
AGGTATGTGT CTCGCTGCTG GAATGGCCGC AGATTTGAAG CGTGGCGTTC ACTTGACCGC
GTGCCGGCTT TTGCGCGCGC TGGAGCGATT GTACCTCTGC AAGTTTTGCC GGAAGTTGCA
GATTGCGAGC GTAGTGCTGA GGCCGCTGAA TCTGTTAATA GCATTGAAAA TCCGCGGGCT
TTGCGAGTTC TTGCATTCCC TGGAGCTGAC GGCGAATTTG TGATGCGAGA AGATAACGGC
GATTTTGCTG CCGCGTCTGC TGGAAATACT GCTAATACAC GTATGAATTT TGTGTGGCGA
GACGGCAATG GTTCTTCGCA ATTTATTATT TCCGGTGTTG CAGGATGTGA TGCTGCCGTA
GAATCTGTGC CGCAAAAACG CAACTGGAAC GTTGTATTTA GAGGAGTTGC TTGCGCAGAT
TTTGCTCACG TGCGCGTGTT TGTTGGGAGC CGAGAGCTTA ACGCAAGCGA GTTTGCGGTT
TCTTACGAAG GCGAAGAGGT GACTTTGAGC TTGTCGGTTT CTGTGAAAGA CGTGCCAGCT
CGTTCGGAAG TTCGCGTAAT TGTTGACGGT GGATTGCAAA TCGCTGCCGA CCCTAAAGTT
GGCGACGCTT ACCGATTCCT GCTTCAAGCG CAAGTGCCGT ACAGAGGCAA GGAAATGGCT
TTTGATGCAG TGCGAGATTC TGGCGGAAGT GCAAGTGCTA TTGCTGAAAT CTCAACTCTT
GAATACGAGA ACGAATCGGA AGCAGAAAAG TATCGCAACA GCGTTGATAT GCTTAACGCT
TACGCAACCG ACCAGCCTTC CGTAGTTAAG TGGGCGCAAT GGCGTTGCAC ACTGCCTGTT
TCGGTAAAGC ACGCGCTTGA GGAGATTTTG CTGCGCTCGG TTGAGTAA
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| Protein sequence | MSVVNMSKQD KSQIIGEAVA YSDSQSQIFA DVANSQYAKA QDSQVIKGEK WRITVITDSL
IRLEWSDDGK FVDNPTQTVI CRNFAQKSVD AQPQFSARTN ENEWLEVETE KLHLTYNCEA
FSKEGLSIVV RGVPCTQFNT WHYGDACPGN LLGTFRTLDQ ANGPVKLGKG ILSRDGWSIL
DDSATCEIAP AEEINGKPNP YGAWVKSRAQ KVSEQSGRYK DLYFFGYGHR YIQAIQDFYK
LTGAQPLLPR FALSNWWSRY YRYRQDEYLQ LHNRFKREGI PFSTAVIDMD WHVTDVDPKY
GSGWTGYTWN EELFPDHRAF LRKLNAAGLS PTLNLHPRDG VRAFEKDYPQ VAQDAGIDPA
SGKAVEFDLT NPQFVKAYFN MHHRMEDEGV RFWWIDWQQG GVTREPGLDP LWMLNHMHYE
DAAREGRWPI TFSRYAGPGS HRYPVGFSGD TVTTWDSLAF QTYFTSTASN IGYGWWSHDI
GGHMLGVRNN ELEARWYAFG AFSPINRLHS TCSPFAGKEP WNFPQETREA MVKMLRLRAE
LLPYVYTMNY RAAFEGRPII EPMYWQSPEV GMAYEIPNEY RFGSELIVAP IVSSNDAAAL
RGCAGVWLPE GDWYDLFDGR RYVSRCWNGR RFEAWRSLDR VPAFARAGAI VPLQVLPEVA
DCERSAEAAE SVNSIENPRA LRVLAFPGAD GEFVMREDNG DFAAASAGNT ANTRMNFVWR
DGNGSSQFII SGVAGCDAAV ESVPQKRNWN VVFRGVACAD FAHVRVFVGS RELNASEFAV
SYEGEEVTLS LSVSVKDVPA RSEVRVIVDG GLQIAADPKV GDAYRFLLQA QVPYRGKEMA
FDAVRDSGGS ASAIAEISTL EYENESEAEK YRNSVDMLNA YATDQPSVVK WAQWRCTLPV
SVKHALEEIL LRSVE
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