Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1281 |
Symbol | grpE |
ID | 8708760 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1530493 |
End bp | 1531191 |
Gene Length | 699 bp |
Protein Length | 232 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 646483369 |
Product | co-chaperone GrpE |
Protein accession | YP_003374470 |
Protein GI | 283783716 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG0576] Molecular chaperone GrpE (heat shock protein) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGACT TTAACGCCAA CGAATATTTG CAAGATATGG AAGATGCTGA CTCGCTGGGT GTAAAAGCTA CAGGTGATTC TGCGAAATCG TCTGCGCAAT CTTCATCGAA AGCTGCTGAA GATGCAAATC CTGCAGAAAC GAAAGCTGAT GCACAAGCTG ATGCTAACGT TTCTGCGGAT TCCGCAAATT CTGAGGATAC AGCGAATTCC ACTGAATCCT CAGAATCGAA AGACAGCCAA GACGCGGATA GCGGCAGTTT AACTCCCTTA GGTAAAGCTA AGAAAGAAGC TGCAGAGTAC TTGGAAGCGT TACAGCGAGA GCGTGCTGAG TTTATAAACT TCAGAAATCG TTCTGCCAAA GAGCAGGATC GTTTCAGACA GCATGGAATT ATTGACGTGC TGACAGCATT GCTTCCGGCA TTGGATGACA TTGACCGCAT TCGCGAGCAT AGCGAAATGG ATGATTCATT CAAGGCTGTT GCAACTAAGA TAGATAAAGC TTTTGAAAAG TTTGGTGTGG AAAAGTTTGG TGAGAAGGGC GAAGATTTTG ACCCGACCAA GCATGATGCA ATTTTGCACA GGCCAGATCC AGACGCTACA AAAGAAACTG TTGATGCTGT AGTTGAAGCA GGATATCGAA TAGGAGATCG CGTTATTCGC GCCGCTCGTG TGGTCGTTTC TTCGCCAAGT AATGACTAA
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Protein sequence | MSDFNANEYL QDMEDADSLG VKATGDSAKS SAQSSSKAAE DANPAETKAD AQADANVSAD SANSEDTANS TESSESKDSQ DADSGSLTPL GKAKKEAAEY LEALQRERAE FINFRNRSAK EQDRFRQHGI IDVLTALLPA LDDIDRIREH SEMDDSFKAV ATKIDKAFEK FGVEKFGEKG EDFDPTKHDA ILHRPDPDAT KETVDAVVEA GYRIGDRVIR AARVVVSSPS ND
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