| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1253 |
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| Symbol | |
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| ID | 8709808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1497960 |
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| End bp | 1498907 |
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| Gene Length | 948 bp |
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| Protein Length | 315 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646483341 |
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| Product | ABC transporter, permease protein |
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| Protein accession | YP_003374443 |
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| Protein GI | 283783689 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.000107069 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAATAAAA AAGATGTATC TTCAAAACCT CAAGAGTCTG CTGCAGATAG AAAAGCTACT
GCTGGTGCCT GGGGCAACTT TAAACGCACT GGTAAGATGA CGCTTTATAC GCGTCGATTC
TTCCGTCGCC CGTCTGCAGT TGTGGGCTTG GTTATGCTTG TAATTTTGAT TCTTTTTGCT
TTGTTTGGCT CAAAGATTTC AAAGTGGAGC TACGACGAAC CAGACTTTTC TTCTCTAGCA
ACTCCTCCTT CTGCAGAGCA TTGGCTTGGC ACTACGCCAG GCGGTTCAGA CATGTACGCA
ATGGTTGTGC GCGGACTTGG CCGTTCACTT TCCATTGGTA TTGTTAGTTC TATTACCATT
ACAGTTATTG CTGCTTTGGT TGGTACTGCC ATTTCTTACT TCGAAGGATG GTTTGAGCAG
GTTGGTATGT GGCTTTTGGA CATGCTGCTG ATTGTTCCTT CCTTCCTGCT GATTGCTTTA
ATCATTAGTG CTTCTAGTGG TGGTAGCGAT TGGCTGTGGT TGGCATTTGG CTTAACAGCT
TTTGGTTGGA TTGGTTACGC TCGTACTCTT CGTACGTTGA CTTTGAGCTT GCGCGAACGT
GAGTATGTTC GTGCAGCTAA GTTCGAGGGC GTTTCTTCGT TCCGCATTAT TGTGCGCCAC
TTGGTTCCAA ACTTGGGTTC TGTATTGATT ATTAACACGG TTCTTGGTGT TATTGGTGCG
ATTAACGGCG AAACTGCTTT GAGCTTCTTG GGCCTTGGTA TTAAGGCTCC GGATACTTCT
CTTGGTACTT TGCTTAATGC TGGCCAAAGC GTTGTGCAGA CTTCTCCGTG GGTGCTTTTG
GTGCCGTCTG CAGTGCTTGT TTTGCTAACC TTCTCCGTGC AGCTTATTGG TGACGGTTTG
CGTGATGCCA TTGATCCATA TTCTAGGTCT GTTGGTAAGG CCGACTAA
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| Protein sequence | MNKKDVSSKP QESAADRKAT AGAWGNFKRT GKMTLYTRRF FRRPSAVVGL VMLVILILFA
LFGSKISKWS YDEPDFSSLA TPPSAEHWLG TTPGGSDMYA MVVRGLGRSL SIGIVSSITI
TVIAALVGTA ISYFEGWFEQ VGMWLLDMLL IVPSFLLIAL IISASSGGSD WLWLAFGLTA
FGWIGYARTL RTLTLSLRER EYVRAAKFEG VSSFRIIVRH LVPNLGSVLI INTVLGVIGA
INGETALSFL GLGIKAPDTS LGTLLNAGQS VVQTSPWVLL VPSAVLVLLT FSVQLIGDGL
RDAIDPYSRS VGKAD
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