| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1251 |
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| Symbol | |
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| ID | 8709818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1493983 |
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| End bp | 1495725 |
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| Gene Length | 1743 bp |
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| Protein Length | 580 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646483339 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_003374441 |
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| Protein GI | 283783687 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00147859 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAAAAATA CAAATGCAGG TAAACTGACT GTATTTGCCG CAGCTGCACT TTCTGTTGCA
ATGCTGCTCG GCGCTTGCGG CGGTGCTACT AACAATGCTG GTAAAGCAGG TATGACTGAA
GAGCCAGCTG CTGGTGTTGA CACTTCTTAC ACTGGCGAAC TTCCAATGCC AGATGTCAAC
AAGCGTTACG ATAATCCACA GTCACGTGAC AACGTTAAGG ACGGCGGCAC TTACACCGTT
GCTCTTCCTG TTCTCGGTCC AAACTGGAAT TACGCTTCTA ACGACGGTAA CTCTGGTTAC
ATGAATACTT TGTGGGGCTT CTACCAGCCA AATCTTATGG CTTATGACAC CGTTAAGGGT
GAAAAGCTTA AGTACAACCC TGACTACATC ACTTCCGTTA AGAAGGTTAG CGATAAGCCA
CTTGTTGTTC AGTACAACTT GAACCCAAAG GCCAAGTGGA ATGATGGCAC TGATTTTGAC
TACACTGCAT TTAAGGCTAC TTGGCAGGCT TTGAACGGAA AGAACAAGGA TTACTCCGTC
CCAAGTACTG AAGGCTATGA CTGCATCAAG AGTGTTGAAC AAGGTTCCAC TCCAAAGCAG
GTTGTAGTGA CTTATGAGAA GCCATGCGCA ACATGGGAAA TGCTTTTCGC TCCACTGGTT
CATCCAAAGG CCGGTGACGT TAAGACCTTC AACCAGGGTT GGGTAAACAA TCCTCACAAC
GAGTGGGGTG CAGGTCCATT CCAGATTGAA TCCGCAACCG AAAATCAGGT TGTTTTCACC
CGCAATCCAA AGTGGTGGGG TAAGAAGGCA AAGCTCGATA AGGTTGTTGT AAAGCGTATG
GAAGATACTG CAGCTTTGAA CGCTTTCCAG AACGGTGAAA TCGATGCTGT AACCGATAGC
ATTTCTGCTA AGGACGCAAT CAAGTCTGCT CGTAGCGTTA AGGGTGCTCA GCTGCGTTAC
GGCTACAGCA CCAAGGTTCG CGTGCTTAAC TTCAACGCTA AGTCCAAGCC ACTTAACGAG
CTTGCAGTTC GTAAGGCTGT TGTTCAGGCA TTCGATGTTG CTACCTACAA CAAGATTCAG
TTCCAGGGCA TGAACTGGAA GAGCGAGCAG CCAGGTTCTG AGCTTCTCTC CATGTTCCAG
GCTGGCTACA AGAACAATCT TCCTGCTGAC GGCAAGTACA ACACCGAAAA CGCTAAGAAG
ACCCTTGAAG CTGCTGGTTA CAAGATGGGC AAGGATGGCT ACTACGCCAA GAATGGCAAG
ACTCTTGAGA TTTCCTTCAC CTTCTTCGGC GATGATTCTA CTCAGGCAGC TCTTGCTAAC
GCATTCCAGG CCATGATGAA GAAGGCTGGA ATTAAGTGCA AGACTGTGAA CCATGCTGTT
GCTAAGTTCT CCGAGGTTGT TGCTTCGCAC GAGTACCAGG TGCTTCCATT GGCATGGCAG
TCCACATCTC CATTGAGCTT CTTGTCTGCA GCAAGCCAGG TTTACAAGTC TGATAGCGAT
TCCAACCTCG GTCTCGTTGG CAATAAGAAG ATTGATGCTA TGCTCAACAA GATTGGCAAG
ACCTACGATT ACAAGGAACA GACTGATTAT GCAAACAAGG CAGAGTCTGC AGCTCTCGCA
CTCTACGGAA CTCTTCCAGT TTCTGCTCCT CCTATTTACC AGGTGTTCAA GAAGGGCTTT
GCTAACAACG GCCCTGCTGG TTACGCAAGC ACCTACCCAG AGGATATGGG CTGGCAGAAG
TAA
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| Protein sequence | MKNTNAGKLT VFAAAALSVA MLLGACGGAT NNAGKAGMTE EPAAGVDTSY TGELPMPDVN
KRYDNPQSRD NVKDGGTYTV ALPVLGPNWN YASNDGNSGY MNTLWGFYQP NLMAYDTVKG
EKLKYNPDYI TSVKKVSDKP LVVQYNLNPK AKWNDGTDFD YTAFKATWQA LNGKNKDYSV
PSTEGYDCIK SVEQGSTPKQ VVVTYEKPCA TWEMLFAPLV HPKAGDVKTF NQGWVNNPHN
EWGAGPFQIE SATENQVVFT RNPKWWGKKA KLDKVVVKRM EDTAALNAFQ NGEIDAVTDS
ISAKDAIKSA RSVKGAQLRY GYSTKVRVLN FNAKSKPLNE LAVRKAVVQA FDVATYNKIQ
FQGMNWKSEQ PGSELLSMFQ AGYKNNLPAD GKYNTENAKK TLEAAGYKMG KDGYYAKNGK
TLEISFTFFG DDSTQAALAN AFQAMMKKAG IKCKTVNHAV AKFSEVVASH EYQVLPLAWQ
STSPLSFLSA ASQVYKSDSD SNLGLVGNKK IDAMLNKIGK TYDYKEQTDY ANKAESAALA
LYGTLPVSAP PIYQVFKKGF ANNGPAGYAS TYPEDMGWQK
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