| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1250 |
|---|
| Symbol | |
|---|
| ID | 8708977 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 1491989 |
|---|
| End bp | 1493803 |
|---|
| Gene Length | 1815 bp |
|---|
| Protein Length | 604 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 646483338 |
|---|
| Product | ABC transporter, ATP-binding protein |
|---|
| Protein accession | YP_003374440 |
|---|
| Protein GI | 283783686 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00143997 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGTATGTGA ATCCAAATAA ATGCAAAGAT GCGAGTAACG TGCGCTGGGT ATTGCAATAC
TGTAAGCCGG ATATGTGGAA AGTTTGGCTT GCTATTTTTC TATTTATTAT CAATGACACG
ATGGCAATGG CAATGCCGTT GCTTTCGGGC TTTATTGTAG ACAAAATCAT TATTGGCAAA
CAGCATAATT TGCTTATAAG CGTATGCGTT TTGATGGTAG CAATGATGAT TGTTCGCGTT
GGCTCAAGGT ATATTTACCA GCTTTTAATG GAAAAGTTTG GTCAAAATGC CGTGTATCGC
CTGGTGAGCG ACGAGTACGA AAAACTTCAT TCTCTCGATT TTACGTACTT TAATCACACT
CGCACAGGCG ACATTATGAG TCGTATGACA TCGGATACTG ACGCGATTCG CCATATTTTA
AGTTGGGTTT CGTATATGGC GTTAGATTGT GTAGTAATGT TCGTGTTAGC GCTGGTTATA
ATGTTTTCAA TTCAGTGGAA GCTCGCTTTA GCGCTTATGT CAATTACGCC ATTTTTGTTT
CTGCTCGCAA AAATTATGGG CAAAAAAGCT AGACCGAAAT TCCTTGCAAT TCGTGAATCC
TTTGCGCGCA TGAATTCAAT GGTGGAAGAA AATATCGAAG GGAATCGCGT AGTAAAAGCT
TTTGTGCGTG AGGATTACGA AACTAAGAAA TTCGATAAGT GCAACGAAGA CTACTTTAAT
CGCAATATTA CGCTTGCAAA AAATACTCAA AAATACATGC CTTGGCTTGA TGGCATGGGT
TTTGTGCTTG AGCTTATAAC AGTTGGCTTC GGCGGATGGC TTGTTCTAAA TGGCAGCATG
ACTTTAGGAA CATTCGTTAC TTTTAACAGC TTCCTTTGGA TGCTTCATAT GCCGGTTAGA
ATGACAGGAT GGCTTATTAA TGATTGGCAG CGTTTTAACG CAGGATGCGT GAATATTCGC
AAACTTCTTA CGCAAGAATC GCATATTAGA CATCCAAAAG AATCGGACGA AACCGTTAAA
ATTAGAGGTA AAATTACTTT TGAGCATGTT GATTTTTCAT TCCCAGACGA TCAAGACTCT
CCAATCTTAA AAGATATTGA TTTAGACATT CCTGCTGGAA GCAAACTGGG TATTCTTGGT
GAAACTGGTT CCGGCAAATC AACTCTCGTA AGTCTTATAG CAAGATTCTA TGATCCTACG
CGTGGTCGTG TTTTAATTGA CGGAAAAGAC GTGCGCGAAT GGCCGTTAGA AACTGTTCGT
AACCAAGTTA GCATAGTTGC GCAGGAAACA TTCCTATTTT CGGACACTAT TGCAGGAAAT
ATTAGTTTTG GATTACCTCA AACTAAAGAA AATTGTAAGG AATTAGATAA TACCATTCGC
ACGATGGCAA CAATTGCTGC AGCAGACGAT TTTATTATGG ATATGCCAGA AGGTTATGAA
ACAGTAGTAG GCGAGCGCGG GGTAGGTCTT TCTGGTGGGC AAAAGCAGCG TTTGAGCTTA
GCTAGAGCGT TGGCAAATAA TCCTGCAATC TTGATTATGG ACGATACAAC TTCTGCTGTA
GATATGGAAA CGGAAGAGCA TATTCAGCAG GAGCTGAAAA AGCTTGATGG CACGCGCACA
ATAATCACTA TTGCGCACAG AATTTCATCC GTTAAAGATG CAGACATGAT TGTTGTGCTA
GATCACGGGA AAATTGTTGA ACGTGGCACG CATGCTCAGC TTGTTGCGGC GCACGGGAGG
TATTGGGAGA TCTATAGAAA GCAACTTGGC TTTAAAACTG GCAGGTCTGC AGGATTCGAA
ACGAAGGGGG AGTAG
|
|---|
| Protein sequence | MYVNPNKCKD ASNVRWVLQY CKPDMWKVWL AIFLFIINDT MAMAMPLLSG FIVDKIIIGK
QHNLLISVCV LMVAMMIVRV GSRYIYQLLM EKFGQNAVYR LVSDEYEKLH SLDFTYFNHT
RTGDIMSRMT SDTDAIRHIL SWVSYMALDC VVMFVLALVI MFSIQWKLAL ALMSITPFLF
LLAKIMGKKA RPKFLAIRES FARMNSMVEE NIEGNRVVKA FVREDYETKK FDKCNEDYFN
RNITLAKNTQ KYMPWLDGMG FVLELITVGF GGWLVLNGSM TLGTFVTFNS FLWMLHMPVR
MTGWLINDWQ RFNAGCVNIR KLLTQESHIR HPKESDETVK IRGKITFEHV DFSFPDDQDS
PILKDIDLDI PAGSKLGILG ETGSGKSTLV SLIARFYDPT RGRVLIDGKD VREWPLETVR
NQVSIVAQET FLFSDTIAGN ISFGLPQTKE NCKELDNTIR TMATIAAADD FIMDMPEGYE
TVVGERGVGL SGGQKQRLSL ARALANNPAI LIMDDTTSAV DMETEEHIQQ ELKKLDGTRT
IITIAHRISS VKDADMIVVL DHGKIVERGT HAQLVAAHGR YWEIYRKQLG FKTGRSAGFE
TKGE
|
|---|
| |