| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1242 |
|---|
| Symbol | |
|---|
| ID | 8709970 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 1478656 |
|---|
| End bp | 1479210 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 646483330 |
|---|
| Product | isochorismatase family protein |
|---|
| Protein accession | YP_003374435 |
|---|
| Protein GI | 283783681 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1335] Amidases related to nicotinamidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.000303599 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAAG CCCTTATTAA CATTGATTAT ACGAATGATT TTGTGGCAAG CGATGGCTCT
CTGACTGTAG GTGAGCCTGC GCAAAAGCTT GAGAAGCGTA TTACTGAGAT TTCGCAGGAA
TTTCTTGACG CTGGAGAGTT CGTGGTTTTT GCGATTGATA CGCATCATTT GAACGATCCG
TATCATCCTG AAACTAAACT TTTCCCACCT CACAATATCG CCGGAACTCA CGGTCAGAAG
CTGTACGGCG CGCTTGGTGA TTTTTACGAG GAAAATAAAG ATAAAAGCAA TGTGTATTAC
ATTCATAAAA CTCGCTACTC GTCGTTTAAT GGCACGGATT TGCTGATTAA GCTGCGCGAA
CGTCATATTG AGGAGTTGCA CTTGGTGGGT GTTTGCACGG ATATTTGCGT GCTTCACACT
GCTGTTGATG CGTATAATCT TGGCTTCAAA ATCGTAGTTC ACAAAGATGC AGTCGCAAGC
TTTGATCCGC AAGGTCACGA ATGGGCTTTG CGCCACTTTA AGACTTGCCT TAATGCGGAT
ATTGTAGAAG GCTGA
|
|---|
| Protein sequence | MNKALINIDY TNDFVASDGS LTVGEPAQKL EKRITEISQE FLDAGEFVVF AIDTHHLNDP
YHPETKLFPP HNIAGTHGQK LYGALGDFYE ENKDKSNVYY IHKTRYSSFN GTDLLIKLRE
RHIEELHLVG VCTDICVLHT AVDAYNLGFK IVVHKDAVAS FDPQGHEWAL RHFKTCLNAD
IVEG
|
|---|
| |