| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1225 |
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| Symbol | |
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| ID | 8709565 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1457785 |
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| End bp | 1458726 |
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| Gene Length | 942 bp |
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| Protein Length | 313 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646483313 |
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| Product | transporter, auxin efflux carrier (AEC) family protein |
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| Protein accession | YP_003374418 |
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| Protein GI | 283783664 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0679] Predicted permeases |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 1 |
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| Fosmid unclonability p-value | 0.0000000182146 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGGCTTAA TCAGCGCAAT GCAAGGCTTT TGCGTAATTG GCATTGTTAT TGCTGCAGGC
TATGTTACTG CTCGCATGCG CGTTGGCGGT TCACAGGCTC AAATGGTCCT AAATCGCGTA
AGTTTTTTCG TTTCCAGCCC TTGCTTAATG TTTGCAATAC TTTCTAAAGA GCCTATTTTT
GAGATTTTTC ACTCTTCGAT TTTTGTTGCA TTCTTTTCTG CAATGATTGT TGGAGTTGCG
TTCGTGCTGC TTAATCGCTT TTGCTTCCAT CTTCCTGCAG CCGACTGCAC TGTAGGTGCT
CTCAATTCTC TTTATTTAAA TTCCAACAAT ATTGGCTTGC CGGTTGCGAC TTATATTTTG
GGAAATCCTG CGCTTGTTGC TCCGATTTTA GTTATGCAAC AGGCTGTATT TACTCCTGTT
GGTTTGACGG TTCTCGACAT TACAACTACT GGAAAATGTT CGCTTAAACG CATCGCTCAG
CAGCCTTTAA AACAGCCACT TTTAATTGGT TCGCTTGGTG GAATTATTAT TTCTGCAATT
TCCGCAAAAG TTGGCTACTT CCCTGTTCCT AATTTTCTTT ACGATCCAAT TAAGATGATT
GGCGATTCTG CAGTTCCAAT GATTTTAATG GCTTTTGGAA TGTCGCTTTA CGGAAGCAAA
CCTTTACGAA AAGATTCCAA TCGCGCTGCT ATTGCCACGG TTGCTGTGCT AAAAAATCTT
ATTATGCCTG CAATTGCATT TTTGCTAGCT TATTTTGTTA TGGGTTTTCG CGGGGCAACT
TTGTACGCGT GCGTTGTGCT GGCTGCGCTT CCAACCGGTC AAAACGTTTA CAATTATGCT
GCGCGCTACA ACGTCGGCTT AAGTTTTGCG CGCGACGGCA TACTGTTTTC TACTGTCACT
AGCCCAATTT GCATAGCAGT AATCGCCGCT ATTTTGGGGT GA
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| Protein sequence | MGLISAMQGF CVIGIVIAAG YVTARMRVGG SQAQMVLNRV SFFVSSPCLM FAILSKEPIF
EIFHSSIFVA FFSAMIVGVA FVLLNRFCFH LPAADCTVGA LNSLYLNSNN IGLPVATYIL
GNPALVAPIL VMQQAVFTPV GLTVLDITTT GKCSLKRIAQ QPLKQPLLIG SLGGIIISAI
SAKVGYFPVP NFLYDPIKMI GDSAVPMILM AFGMSLYGSK PLRKDSNRAA IATVAVLKNL
IMPAIAFLLA YFVMGFRGAT LYACVVLAAL PTGQNVYNYA ARYNVGLSFA RDGILFSTVT
SPICIAVIAA ILG
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