Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1189 |
Symbol | |
ID | 8709033 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 1396220 |
End bp | 1397152 |
Gene Length | 933 bp |
Protein Length | 310 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 646483279 |
Product | glycosyltransferase, group 2 family protein |
Protein accession | YP_003374386 |
Protein GI | 283783632 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0463] Glycosyltransferases involved in cell wall biogenesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 32 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTTCTG TCGCAGTGCT GCTGCCGTGC TATAACGAGG CAATCACCAT TGAAAAAGTT GTTAAAGACT TTAAGGCGGC ACTTCCAGAA GCAACGATAT ACGTGTACGA CAACAACTCA ACGGACAATA CTGCAAAAAT AGCCAAAGAA GCAGGTGCTG TAGTTCGCAA AGAACCTAGA CAAGGCAAAG GCAATGTGAT TCGTGCAATG TTCCAAGACA TAGACGCAGA TGTTTACGTA ATGGCAGACG GCGACGACAC ATATCCCGCT GAAGCGGCAC CAAACATGGT CGCCAAAGTT ATTGAAGGCT ACGACATGGT TATTGGCGAC CGTCTAAGTT CTACGTATTT CCAAGAGAAT AAGCGACCAT TCCACAATTT TGGAAATCGT TTAGTTAGAG GCGCAATCAA CACGCTTTTC CACGCAAAAG TAACTGATAT TATGACAGGC TATCGCGCTT TTTCTTTTTC ATTCGTAAAG ACTTATCCTG TACTTTCGCG CGGATTCGAA GTTGAAACAG AAATGACTAT TCATTCACTC AACAACAATA TAAAACTGTA CGAAATGCCA ATTCAGTATC GTGACCGCCC AGAAGGATCA GTTAGCAAGC TAGACACAGT TGGAGACGGT ATTCGAGTGC TTTCAACCAT TTTTCACATG ATTCGCGAAT ACAAACCAAT GCCTTTCTTT GGAACACTTG GCGTAATAAT AACACTGTGC GGAGTAGGAG CATGCATGCT TCCATTCATA GAATTTTGGC GCACACACCT AGTAACACGC TTCCCTACTC TAATTGGTGC TGTAATGCTA ATTATTACAG GATTACTATT CTTTATTTCC GGAATTATTC TTGAGATTTT AGCCAAAAAT GAGCGCAAAC GTTTTATAGA ACAAGTAAAC CTTTTTGATT ACATAAAAAG AAATAGAAAG TAG
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Protein sequence | MTSVAVLLPC YNEAITIEKV VKDFKAALPE ATIYVYDNNS TDNTAKIAKE AGAVVRKEPR QGKGNVIRAM FQDIDADVYV MADGDDTYPA EAAPNMVAKV IEGYDMVIGD RLSSTYFQEN KRPFHNFGNR LVRGAINTLF HAKVTDIMTG YRAFSFSFVK TYPVLSRGFE VETEMTIHSL NNNIKLYEMP IQYRDRPEGS VSKLDTVGDG IRVLSTIFHM IREYKPMPFF GTLGVIITLC GVGACMLPFI EFWRTHLVTR FPTLIGAVML IITGLLFFIS GIILEILAKN ERKRFIEQVN LFDYIKRNRK
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