Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_1136 |
Symbol | |
ID | 8709608 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 1310867 |
End bp | 1312519 |
Gene Length | 1653 bp |
Protein Length | 550 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 646483227 |
Product | hypothetical protein |
Protein accession | YP_003374335 |
Protein GI | 283783581 |
COG category | |
COG ID | |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTATGA TTTTTACCAT GGTTCGCCTT CGCTGGGCGC TTACTTTTTC TGTTATGCGA AAGTCAATTT GGCAAAAAAT TGGCTTTGCT ATAGCAATTG TTTTTGGACT TGCGCTTATA TGCGCTCTTG GTTTTGCTGG CTGGGAAACT GGCAAGTACA TTAATCCAGG AATGCTTGCA GATACTAAAA ATTGGCAGGA ATTCCAATTG GCTCCAATAA TGGTTGCGTC GATTGTGTCA ATTTTTACGC TGTTTATAAA CGTGTTTATG TTTGGCAGCG ACACAACACT AAAATCGCGT AGTTTTGCGC TTTACGGCAT TCCTTACGTA AAGCAGCAAG CTGGCATGCT TCTTGGCTCT CTTTTTGGAG CGCTTTCAGT AAGCTGCACA ATCGCGCTTG CTTTGTGGTC TTTAGCGTAC AGAAGCTTTG GAATTGTGCC GGTTTTAGTC AGCGTAATTG CAGCTCCGCT TTACGTTGCA ACAATCGTGT CTTTAAGCAA AATGCTTATT GAGCTTTTAG ATACTATTTT AATAAACAAG CGTTCAAGAA ACATTTTTTA CTTTGCCATT TTTATAGCGT ACATGATTTT TGTTTCATCA ATGAATACGC ATAGCCCTTC GCCAAATGGA ATTGCGCTAG GCACAAGTTT CTGTGCTGCG TCCGCTTTTA CACCATTAAG TGCAGCTATG GCTTTGCCGC TCGATGCTAT TAATGGCAAT TGGCTTGCTC TTGCTATTCG CTTCCTTATT TGCGTTGTAA CGATTGCTGC TTGCTTTGCA ATCTCTGTAT TTTGCGCAAA ATTAGAGCCG AAGTTGCTTC GTGGTGAGCA AAAAACAGTT GTTAAAACTA AGGGAATCGG CTTGTTTGCA GCAGTTCCAG ACAACACAGT TGGTGCGATT ATTGCGCGAA TTATTAGCGT TATGAGAAGA GATATGCGTC AGCTATTTTT GCTTATTGCG CCGCTTTTTA TGCTGGTAGT TGCAGGAGGA AGTAGTTTTA AGGCTAAAGG ATTTGATTCT CTAACAGATA ACTTAGGTGT TTCTGGATGG ATGATGTATG CTGCTTTGCT TATGGGCATG GTTGTTGGAA ACAATATTGC TTACGATGGC ACAGCTTTTA CTATGCATGC GATTATTGGA GTAAAAGGTT TGCACGATCG CTTAGCGAAC GCAATAGTTT GGTCAGTGAT TTGCGCTGTT TATTTTGCGA TTATTGGAGT AGGGGTTTAC GTTTTCCTTT TCTTTGTAGC AAATGTTCAG CAAAATGTGA ATGCAGTTAT GTTCCAAACT CTTTGTCCAA TTGGAATAGC TTTTGCTTCC ATAGGCATTG GCTTAATTTC TTCGTGCATT GCAATGTACC CTGTGGCATC AATCGAAAAG CCATTTTCTA GGCCGCAAGG AAGTGCTGGC GGGCGAAGTT TTGCAGCTAT AGGCTTTATG CTTCTTTCTG TAGTTTGCAT GATTCCTTCG GTTGCGGCTG CGATTGCGTT TATGATTCTT GCGCCGCAAC TGCTGTGGAT TGCAAGCATT TTGTTTGTAG TAAACGGCTT GATTGTGCTG GTTGTTGGCG TGATTCTTGG TGGCAAAGTA ATGGATAAGC GCATGATTCG CATTGTAGAA AACTTGCGCA GATTCGCGTC TATTACTGCG TAA
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Protein sequence | MSMIFTMVRL RWALTFSVMR KSIWQKIGFA IAIVFGLALI CALGFAGWET GKYINPGMLA DTKNWQEFQL APIMVASIVS IFTLFINVFM FGSDTTLKSR SFALYGIPYV KQQAGMLLGS LFGALSVSCT IALALWSLAY RSFGIVPVLV SVIAAPLYVA TIVSLSKMLI ELLDTILINK RSRNIFYFAI FIAYMIFVSS MNTHSPSPNG IALGTSFCAA SAFTPLSAAM ALPLDAINGN WLALAIRFLI CVVTIAACFA ISVFCAKLEP KLLRGEQKTV VKTKGIGLFA AVPDNTVGAI IARIISVMRR DMRQLFLLIA PLFMLVVAGG SSFKAKGFDS LTDNLGVSGW MMYAALLMGM VVGNNIAYDG TAFTMHAIIG VKGLHDRLAN AIVWSVICAV YFAIIGVGVY VFLFFVANVQ QNVNAVMFQT LCPIGIAFAS IGIGLISSCI AMYPVASIEK PFSRPQGSAG GRSFAAIGFM LLSVVCMIPS VAAAIAFMIL APQLLWIASI LFVVNGLIVL VVGVILGGKV MDKRMIRIVE NLRRFASITA
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