| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1080 |
|---|
| Symbol | |
|---|
| ID | 8708957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | - |
|---|
| Start bp | 1236118 |
|---|
| End bp | 1237575 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 646483172 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003374283 |
|---|
| Protein GI | 283783529 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCAAT CCGAAGCCTT AACCATAATC AACGCTGGCG CGAGCGCGTT CATTACCGGT
GCTCCGGGTG CAGGTAAAAC CTACGTATTA AACGAAGCTA TTCGCGCAAT GCGAAAGAAC
GGTTTAAGCG TTGCTGTAAC TGCCTCTACC GGTATTGCGG CAACGCACTT AAACGGTCAA
ACCATTCACT CGTGGAGTGG AGTTGGAGTT TCAAACGCGC TTACGGATAC GCTTCTTAAA
ACAATTAGAG CTAGGCGAGG AAAGCGCATA AAAGCCACGG ACGTGCTCGT GTTGGACGAA
GTTTCCATGA TTCACGCGTG GCTTTTTGAC ATGGTTGATG AAGTTTGCCG GAAGGTGCGC
AAAAATCCCG CTCCTTTCGG CGGGCTTCAA GTAGTTATTT CGGGCGACTT CTTCCAATTG
CCGCCTGTTA GCACTTCTAT GCGAAATCGT GACGTGTTCG AGCCGAGCTC GGAGTTTATT
TCGTCGCGCG AAAAGTATGC TGCAGCTGGA AAAAATCCGG AAGGCTATAT TACGGAATCG
TTTGCATGGG ACGCTTTGAA ACCTGTTGTG TGCTACTTAA CTGAGCAACA TCGTCAGGAT
GACGGCAAGT TGCTAGAAGT TTTGACGGAT ATTCGTAGCG GTCTCGTGAG TGACGACGAT
AAGCAAGTGC TTGCTAGCCG CCTTGGTGAG TATCCGCAAG ATGACGAAGT TGCAGTACAT
CTTTTCCCAA CGAACGCGCA AGCAGATGGC TTAAATAATA TGCAGCTTGC GGAAATTAAT
GCTGAGTCTC ACGAATTCGT TGCAACGGAA GCAGGACCTA AAAATCTCGT TGATCGATTA
AAAAAGAATA TGCTTGCTCC GGAGCGTTTA GTTTTAAAGG CTGGGGCTGC TGTGATGGCG
TTGCGAAACG ATCAGGAAAA GCAGTATGTA AACGGCTCTG TTGGGCGTGT GTTGCGTTTT
GCGCCTGAAT CTAAGGGCGG ATGGCCGATT GTTGAGTTTG AAAACGGCAA TATTGTAACT
CTTAAGCCTG CAGCGTGGGA AATGACGGAC GGTGAGACTG TACTTGCTAG CGTAAATCAA
GTGCCTCTTC GTTGCGCGTG GGGAATTACG ATTCATAAGT CGCAAGGTAT GACTCTCGAT
AGTGCGGTAA TGGATTTGCG TAGAACTTTC GCTCCCGGAA TGGGATATGT TGCGCTTTCT
CGCGTGGAAA ATCTGGGCGG TCTTTATTTG GAAGGTATTA ACGATCGCGC GTTTAGTGTT
TCGGCGGATG CTGTACTGCT AGACGGATCT TTGCGTGAGG CGTCAAGGTG CGCAAGTGAG
CTGCTTGCTA GCGATGGGGC TTCCTCGTTT GTTGCCAAAA AAGCAGATGG TGATTTTGCG
GATCAGCAGG AGTTTAGTCT TTTTGAAAAT GCCGGTGATG GCGTTACGGA CGAATTTTCT
TTCGACGACG AGTTTTAA
|
|---|
| Protein sequence | MKQSEALTII NAGASAFITG APGAGKTYVL NEAIRAMRKN GLSVAVTAST GIAATHLNGQ
TIHSWSGVGV SNALTDTLLK TIRARRGKRI KATDVLVLDE VSMIHAWLFD MVDEVCRKVR
KNPAPFGGLQ VVISGDFFQL PPVSTSMRNR DVFEPSSEFI SSREKYAAAG KNPEGYITES
FAWDALKPVV CYLTEQHRQD DGKLLEVLTD IRSGLVSDDD KQVLASRLGE YPQDDEVAVH
LFPTNAQADG LNNMQLAEIN AESHEFVATE AGPKNLVDRL KKNMLAPERL VLKAGAAVMA
LRNDQEKQYV NGSVGRVLRF APESKGGWPI VEFENGNIVT LKPAAWEMTD GETVLASVNQ
VPLRCAWGIT IHKSQGMTLD SAVMDLRRTF APGMGYVALS RVENLGGLYL EGINDRAFSV
SADAVLLDGS LREASRCASE LLASDGASSF VAKKADGDFA DQQEFSLFEN AGDGVTDEFS
FDDEF
|
|---|
| |