Gene HMPREF0424_1069 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1069 
SymbolsmpB 
ID8709902 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1220879 
End bp1221376 
Gene Length498 bp 
Protein Length165 aa 
Translation table11 
GC content43% 
IMG OID646483161 
ProductSsrA-binding protein 
Protein accessionYP_003374272 
Protein GI283783518 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0691] tmRNA-binding protein 
TIGRFAM ID[TIGR00086] SsrA-binding protein 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.439427 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAATA AGCCTGCGCA AGATGGCACT GTTACTGTGG CACAAAACCG TAAAGCGCAT 
CATGATTATG TAATTGAAGA TTGTTATGAA GCAGGTCTTG CTCTTACTGG TACTGAAGTT 
AAGTCACTTC GCGAAGGGCG TGCTTCTTTA GCTGAATCAT TTGTGAATAT TGATCGTCGT 
GGTGAAATGT GGCTTGAAGG AGCAAATATT CCTGAATATT TAAACGGCAC ATGGAATAAT 
CATGCTCCTA AGCGCAAGCG TAAGCTTCTG CTTCACGCTG CTGAGATTGC TAAGCTTTCT 
AGGCAAACTG AGGCGAAAGG CTACACTGTT GTGCCTTTGC GTTTGTATTT TAAGGGAAGC 
TACGTAAAAG TAGAAATTGC TTTAGCGCGC GGTAAAAAGG AATTTGATAA GCGTCAGGCT 
TTGCGTGAGG AGCAAGATAA GCGAGAGGCT TTGCGTGAAA TGCGTTACCG TAATCTGCGT 
TCTCGTAGTA TTGATTAA
 
Protein sequence
MANKPAQDGT VTVAQNRKAH HDYVIEDCYE AGLALTGTEV KSLREGRASL AESFVNIDRR 
GEMWLEGANI PEYLNGTWNN HAPKRKRKLL LHAAEIAKLS RQTEAKGYTV VPLRLYFKGS 
YVKVEIALAR GKKEFDKRQA LREEQDKREA LREMRYRNLR SRSID