| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1052 |
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| Symbol | alr |
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| ID | 8708886 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | - |
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| Start bp | 1198105 |
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| End bp | 1199484 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 646483144 |
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| Product | alanine racemase |
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| Protein accession | YP_003374255 |
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| Protein GI | 283783501 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0787] Alanine racemase |
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| TIGRFAM ID | [TIGR00492] alanine racemase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.399759 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTACAG ATTTAAGTAA TGCGGCAAGT AATAGTGCAA GTAATGCGGC AATGTTAGAA
GCAAACTATG CTCGCGCGTT AAGTGCATAC CCTGGGCAGG TAATCGTCGA TTTGAAGGCA
CTTCGAGACA ATATGCGCAC TTTGGTTGCG CGCGTTTCGC AAGATTTGCA GCCTGGTCAG
AATGCGCCGG AAGTTATGGG AGTCGTAAAA GCAGGCGGAT ACGGCCACGG GCTTATTCCT
AGTGCGCTCG CGGCTTTAGC TGGAGGCGCT ACTTGGCTTG GCACAGCTCA ACCGTACGAG
GCGTTACGTT TGCGTGCAGT TGGTATTGAT TCTAGCCGTT GTCATATTCT CACTTGGCTT
ACTAGCGCTC CAACTACGAG ATTTGCAGAT TTGATTACAG CAGATATCGA TATTTCTGTA
GGCTCTATTG ACTCGCTTGA TGCTGTGGCT TTTGCTGCAC GAAAGTTAGG TAAACCTGCT
CGCGTGCACG TAAAAGTCGA TACTGGTTTT GGACGAAACG GTTTTACGCC AGAAGGTTTT
TGTGCCGCTC TAGAAAAATT GCAACAATAC TCTAGTGAAG GCGTAATCGA GGTTATTGGC
CAATGGAGTC ACTTAGCTGT AGCAGATTCT CCTGACGTTC CAGAATTTGT AGATGCAACC
GACCGTCAAA TCCAACAATT CCACGAGTTT ACGAAACGCA TGAAAGAAGC ATCGGTTGCT
CCTAAAATCC GCCATTTAGC GAATACTGCT GCAACGCTTA ACCGTCCTGA AATTCGTTTT
GAACTTGTTC GTCCAGGAAT TGGTTTGTAC GGCTACGAGC CGGATCCTGC AATGGGAAAT
TCCCAAACCT ACGGATTGCA GCCTGCTATG ACGCTTCAAG CGCAACTTGG AACTGTAAAA
ACTGTAGAAG AAGGGCATGG AATTTCCTAC GGACGCACGT ATTTAACTCC AAATAATACG
AGTACTGCTA TTGTGCCTCT TGGTTACGCT GACGGCATTT TGCGATCTGC TTCCGGATTC
GATATGCAAG GTGCGCGTCA TGTTAATAAG CCAGGCGGTC CGGTTAGAGT AGAAACAAAG
AATGGTGCTC GAATTGTGAA CGTTTCTGGG CGAGTTTGCA TGGATCAGTT CATAGTTGAT
TTAAAAGGCG ATGCTTCAGA GTTAGGTGTT CTGGAAGGCA ATACTGTAAC GCTTTTTGGT
CCTGGAAGAG GCTTGGAATT TGCCGAGCCT ACTGCAGACG ATTGGGCAGA AGCTGCAGGA
ACAATCAGCT ACGAAATCAT GACTGGAATT GGGCCTCGCG TGCCGAGGCT TTACCGCAAC
GCTTACGAAG TGCTATCTTC TAGCGATATT GCAAAACTGG ACGCAAAAAG TCTTATATAA
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| Protein sequence | MSTDLSNAAS NSASNAAMLE ANYARALSAY PGQVIVDLKA LRDNMRTLVA RVSQDLQPGQ
NAPEVMGVVK AGGYGHGLIP SALAALAGGA TWLGTAQPYE ALRLRAVGID SSRCHILTWL
TSAPTTRFAD LITADIDISV GSIDSLDAVA FAARKLGKPA RVHVKVDTGF GRNGFTPEGF
CAALEKLQQY SSEGVIEVIG QWSHLAVADS PDVPEFVDAT DRQIQQFHEF TKRMKEASVA
PKIRHLANTA ATLNRPEIRF ELVRPGIGLY GYEPDPAMGN SQTYGLQPAM TLQAQLGTVK
TVEEGHGISY GRTYLTPNNT STAIVPLGYA DGILRSASGF DMQGARHVNK PGGPVRVETK
NGARIVNVSG RVCMDQFIVD LKGDASELGV LEGNTVTLFG PGRGLEFAEP TADDWAEAAG
TISYEIMTGI GPRVPRLYRN AYEVLSSSDI AKLDAKSLI
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