Gene HMPREF0424_1020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_1020 
SymbolrecX 
ID8708964 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand- 
Start bp1150543 
End bp1151211 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content41% 
IMG OID646483113 
Productregulatory protein RecX 
Protein accessionYP_003374226 
Protein GI283783472 
COG category[R] General function prediction only 
COG ID[COG2137] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTATTA GTGTAGAGAG TTTTCTTCGC GATCATCCAG TAGAGCGTGC TGACGAAAAT 
GACGAAAGTA ATAGTGTAGT GACACATACT CGCAAAAAAA TATCGCATAA GTCAGTACTT 
TTAAGCGCAA AAAATAATAC AAAAAACATG CCGTATGTAA AAAACGCTAA AGTAAGTGAT 
TTAAGCGACG AACTTTGCAA TAGTAGTGAA GATGATTGCA GGGAAGCTGC TTTAAGGCTT 
TTAGATTATG CTCCTCGCTC TGTGATGAAC ATGCGCAAAA GGCTTAAAGA AAAAGGTTAC 
ACGGAAGTTG CTGTTGACGC GGTTATTCGT CGCTTGCTTG AATTGCATCT TCTCGATGAC 
AATCAATACG CTCAAATGGT GATTCGCTCT TGCGCAGTGA GGCTTCTTGG TGCTAGAGCT 
ACTCGAATGG AATTGCAGCG TAAAAATGTT GATCCTGCTG CTATTTCACA AAATGTAGCT 
TCTGCTCAAA ACTCTGGAGT ATTCACTGAA GCAGCGTGGG AACTCGGTCG CAAAACGGCT 
TCGCGCACGA GAAATCTTGA GCCTTTAGTT CGAAGACGAA GATTTTTCGC AGCAGCTGCA 
AGAAAAGGTC ATGATTTAAA CGTTATTAAC GAAGTGTATG CAGCTTTATT CGAAAGTAAT 
AACGAATGA
 
Protein sequence
MPISVESFLR DHPVERADEN DESNSVVTHT RKKISHKSVL LSAKNNTKNM PYVKNAKVSD 
LSDELCNSSE DDCREAALRL LDYAPRSVMN MRKRLKEKGY TEVAVDAVIR RLLELHLLDD 
NQYAQMVIRS CAVRLLGARA TRMELQRKNV DPAAISQNVA SAQNSGVFTE AAWELGRKTA 
SRTRNLEPLV RRRRFFAAAA RKGHDLNVIN EVYAALFESN NE