| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_1002 |
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| Symbol | |
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| ID | 8709337 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1135477 |
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| End bp | 1136472 |
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| Gene Length | 996 bp |
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| Protein Length | 331 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 646483095 |
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| Product | glycosyl hydrolase family 25 |
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| Protein accession | YP_003374210 |
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| Protein GI | 283783456 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3757] Lyzozyme M1 (1,4-beta-N-acetylmuramidase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCATTAA ACGGCATTGA TGTATCCTGG TATCAGCGCG GCATTAATAT CGCAGCAGTA
CCAGCTGATT TTGTCATCGT TAAAGCCACC GAAGGCGCAT GGTATACGAA CCCGTGTTTT
CATGCTCAAG CAGACGCAAC GCTAAACAGT GGCAAACTGT TGGGCATTTA CCACTATATT
AGTGGCGGCA ACGCTCAGGC TGAGATGCAA TACTTTGTGA ACGCAGTAAA GCCTTATATT
GGGCGCGCAA TACTCGCACT CGACTTTGAA AGCGGCAGCA ACAGCGCTTA CGGCGATACA
GCGTACTTAC AACAGTGTGC GCAAACAGTT TACAATCTTA CTGGCGTGCG TCCTCTTCTT
TACGGCAGCC AATGTGACTA CGGTAGGTTA GCTCGAGTAA GCAAAGCAAC AAACTGCGGA
CTGTGGATAG CACAATACGC TAACTCCGCT CACACAGGAT ATCAGAGCGA GCCTTGGAAC
GAAGGATCTT ATAGTTGTGC AATACGCCAA TATTCTAGTG CTGGAGCGTT GCCAAACTAC
GGCGGCAACC TTGACCTTAA CAAGTTCTAC GGTGACCGCA CGGCGTGGAA TAAATACGCT
CAATCAGACC ATGCAACTCC TCCACCGGCA CCGAAACCAG CACCAAAACC GGACGTGTCA
CCGATAGAGC ACGACGGGGA CATTAGCAGC TTTACTATGC ACATTCCATG GGGTACGAAC
CAAGACCAGC GCATGGGGAT CACACGATGC GGCAACGTTG TCACAGTGAA TGGGTGCGGT
TGCGTGGTTT GCGGCGGCGG CTCATGGATA CACGCGAGAG AGCAAGTCCC TGAAGGTTTC
CGACCAGTTT CTTTGGCAAC AATCCGCTTA TCCGGCAATG GCACAGGAAG CATCATGGTA
AAGCCAGACG GAAGCATCTG CTGGGATGGC GACGGTAAAA ACTGTTTCAC GCACATCAAC
GCGACGTGGA TAACCAAAGA CAACCAGCCA AAATAA
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| Protein sequence | MALNGIDVSW YQRGINIAAV PADFVIVKAT EGAWYTNPCF HAQADATLNS GKLLGIYHYI
SGGNAQAEMQ YFVNAVKPYI GRAILALDFE SGSNSAYGDT AYLQQCAQTV YNLTGVRPLL
YGSQCDYGRL ARVSKATNCG LWIAQYANSA HTGYQSEPWN EGSYSCAIRQ YSSAGALPNY
GGNLDLNKFY GDRTAWNKYA QSDHATPPPA PKPAPKPDVS PIEHDGDISS FTMHIPWGTN
QDQRMGITRC GNVVTVNGCG CVVCGGGSWI HAREQVPEGF RPVSLATIRL SGNGTGSIMV
KPDGSICWDG DGKNCFTHIN ATWITKDNQP K
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