| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0994 |
|---|
| Symbol | |
|---|
| ID | 8708969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Gardnerella vaginalis 409-05 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013721 |
|---|
| Strand | + |
|---|
| Start bp | 1124861 |
|---|
| End bp | 1128382 |
|---|
| Gene Length | 3522 bp |
|---|
| Protein Length | 1173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 646483089 |
|---|
| Product | phage tail tape measure protein, TP901 family |
|---|
| Protein accession | YP_003374204 |
|---|
| Protein GI | 283783450 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01760] phage tail tape measure protein, TP901 family, core region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCGCAAA ACGAGAATAT TACTATTCGC ATGACCGCGG ATATTGCTGA CTACTCGGCA
AAACTCCAAA CGGCAGCACA CTTGACTGGA AAGTTTGACA GTTTTGTAAA GAGTGCTGGT
ACTACTGGGG AAAAGACCGG TCGCATAATG AGGGCACTTG CTATTGGTGC TGGTGCAGTT
GCTGTTGCTA TTGGTGTTGA TGCTACGCGT CGCTTTGCCG AGTTTGACCA AGCTATGGCG
GCTGTTAGGG CTAACGTCAC TGAGAATGTT GGAGAGTTAA AGAAGCTTGA GACAGCAGCG
TTGGATGCTG GGCGTAGTGG CATGTTTTCT GCAACTAAAG CTGCTAATGC TATCAATGAG
CTTGGTAAAG CCGGTGTGAG CGTTAAGGAT ATTATTGGCG GCGGTTTGAA GGGTGCTCTT
GATTTGGCAG CTGCTGGTGA GATGAACGCT GCTGATGCTG CTGAATTGAC GGCTTCTGCA
TTGAATCAGT TCGGGCTTGC TGGTTCTAAA GCGTCTCATG TTGCAGATTT GCTTGCAGCT
GGCGCAAACA TGGCACAGGG TGGTGTGCAA GATATGGGCG AGGCATTGAA GAACGTTGGT
GTTAACGCTC ACATTCTCGG AATGAGCGTT GAGGAAACTG TTGGCGCTCT AACACTGTTT
GCATCTAAAG GTTTGGTTGG TTCTGACGCT GGTACAAAGT TTAATGCTAT GCTTCAGAAT
CTTGTTGCAC CGTCTATTCG AGCGCAGGGT ACTATTAAGA AGCTTGGATT GCAGATTTAT
GATTCTCAAG GCAGATTTGT TGGCTTAGCG AGTGTTGCTC AACAGTTGCA TGATAAGCTT
GGGCATTTAA CTCAGGCGCA ACGAAATGCT GCTCTTGGAC GTATTTTCTC TAACGCAGCA
TTGACAACCG CTAACACTTT GTATGAGCAG GGCGCAAAGG GTGTTGAAAA GTATACGAAG
ATGATTAACC AACAGGGGTT CGCGTCAAAA GTTGCTAACA CTCAGATGGA TAATCTCAAA
GGTCAGCTCA CTCGCCTTGG CAATGCGTGG GATACCATGC TTATTAAAAT CGGCAGCGGC
AGGAAAGGTA TTATAAGCGG CATGATTGGG GCTGTTACCG GGCTTGTTAA CGCATTCGCA
GCCTTACCTC CTGAAGTTCA GCAAGCCGTC ATTGCAATAA CCGCGCTAGT CGGTATTGGT
GCTGGACTGT ATGACATGTA TCGTAAAAGT TCTAGATATG GTGGCGTTGT TGCTAAGAGT
TTTGACTTTA TAGGCAGTAA AGCAAAGCGG CTATTTACGC TGTTGAAGAG CACAAAACTT
GGTGCAGGAC TTGAATCAGC CTTTAGGAGC TTAAGCAGTA CTGCAACTGA TACTTTTTCA
AGTATTGGGT ACAAGATTGC TGGGGCTAGT TCTGGGTTGA GTGTTTTTAA GGCTGGCGTT
CTCGGATTAA CTGCTGTCAC AACAGGAGTT CTTGTTGCTG CATTAGCGGC AGCAGCGATT
GGTTTTGTGA TGTGGCAAGC TAAAGCTGAT GCTGCCAAAA AGCAGACTGA TGCACTAAAA
GATACTGTGC GTAATAGTGG TGACGTATAT CGTAAGCTTG CTGATGAATT AAAAAACGGC
AATGATGGAG TCAGCTGGTT TACAAAAGGC ACTCAGAATT TTACTGACGC TCTTAAAACT
TGCGGCGTAA GCATGGACAC GTTTGTTAGC GCAGTCAAAG GCAGCAAAAC CGCTGTCACG
TCTTTCAATA AAGCCTTAGA TAAGACTTGG AAAAACTCTA CTCCAGACAG GTTCGGCGGA
ATCACAAAAC AATCTGTCAA CATTCTTAAG GAAGCGTTTG ATCAAGCAAA AAAGAGCGTT
AAAGACGCAC AAAACGCGAT GAAAGAGGAA CAAGCGCAGC AGAAAGCAAA TGCGCTAGCT
TCTTCGCAGC ACGCGGACGC GCTCATGAAG GGCGCGGAAG CCGCAGCCAA AAACAGTGGT
GAAATATTAA AAGTCGCTAA AGTAGAAGAC ATTCTTATAG CAAAATTCGG TGCTAGTAAA
AACGCTATCA ACGCTCAAGC AGAAGCCATC AACAATAATG TTGAAGCAAT GCAAAAATAC
TACGGTTTCG CAATGGACGC TGACCAAGCA CTCACAAACT TGGATAAAAC AATACGCGAA
AGTAGTAAAA GCGTTGCAGA AGCCGGTAAA CATTGGATGG ATAACACTGA TGCTGCCGAT
AAAAACATGA GCGCGCTCAC AAGCCTTGCT AAGCAAACAT TCGAAACCGC TGAAGCGATG
GCTAAAAACG GTGAAAGCGT TGAAAATGTA ACCAAAGCAT TCGACAAAGG CAGTGCCGCG
TTCGTTGACC TTGCTCAAAA AACAGGCATG AGCAAGGATA GAGCAATTGC GCTCGCAAAA
GCTTGGGGTA TTAGTCATGA TGCGCTCATG AAGCTGATTG GGGCTGCGAA ACAGTCTAAT
GTTGAAGCAA AAGTTACCGC AAAAGACAAC TTTAGTGAAG TGTTTAAAAA ACAGAATCTA
TCTGTAAAAA ACCTTAAAGG CGGTAAGTTT GAGATTACTG GCAACAACAA GAAGGCTCTT
GATGCTATTG CTAAAGTATC AAAAGCAAAG CTTGACCCTA AAAAGCTGAC TCTTACTCTT
GATAAGAAAC AGCTTCAGAC CGCTCTTGAT GCGGTTAAAA AAATGAAGCC GGTTGAAGTT
AAGGCAAAAG TTAAAGCTGA CACTAAGCAG GCTAAAAAAG CTATTGCGGA TGTTAGTAAG
GCTAAAGTGC CGGACAAGAC TGTCAAACTC AAAGGTGATA AGCGTAATCT TGACTCGACT
ATGTCTAAAG CTAAAGCAGC TAAAGTGCCG GACAAGACTG TCAAACTCAA AGGTGATAAG
CGTAATCTTG ACTCGACTAT GTCTAAAGCT AAAGCAGCTA AAGTGCCGGA CAAGACTGTC
AAACTCAAAG GTAATAAAAC TGATTTCCAA AACAAGTTTA ACAGCGCACA AAGCGCACGG
TTAAGAGATA AAACTGTGTA TTTTAGAGCG AACGCCAATG AGGTTTGGAG TGCTATAAAT
GCGATTAATA ACGCTAGCGT ACACGTCAAT GCTCGAGTTC ATCGCGCGAA TGGTGGTGTC
GTGTATGGTG CTGGTACTGG TACATCAGAT AGTATTCCAG CGATGCTTTC TAACGGTGAG
TACGTTATGA CAGCCGCCGC GGTTCAGCGC ATTGGCGTGA ACATGCTTGA CCGTTTAAAC
TACGGGAACT CTATTGCAGG ATCTGAGAAA CCAGCATCTA ATACTGGTGG GGATATGCTC
GTGAACGCTG TGAATGGGTT ACGAAACGAT ATGCGCGCGT TAAACGACAG GCTGGTCGCG
TCAGGGTGTG TGGCTAATTC TAACGTTGCT GAAGCAATGC GCAGCGTTTT TGACGATGGA
GTAAAACTCA AGCTTGATGC TAACGGTCGT GAAGTAATGG CTGGGCTGCT TGCTACGCCT
ATGAGCCGAG AACTTTCTCA CATGATAGAT TTAGGAAGGT GA
|
|---|
| Protein sequence | MAQNENITIR MTADIADYSA KLQTAAHLTG KFDSFVKSAG TTGEKTGRIM RALAIGAGAV
AVAIGVDATR RFAEFDQAMA AVRANVTENV GELKKLETAA LDAGRSGMFS ATKAANAINE
LGKAGVSVKD IIGGGLKGAL DLAAAGEMNA ADAAELTASA LNQFGLAGSK ASHVADLLAA
GANMAQGGVQ DMGEALKNVG VNAHILGMSV EETVGALTLF ASKGLVGSDA GTKFNAMLQN
LVAPSIRAQG TIKKLGLQIY DSQGRFVGLA SVAQQLHDKL GHLTQAQRNA ALGRIFSNAA
LTTANTLYEQ GAKGVEKYTK MINQQGFASK VANTQMDNLK GQLTRLGNAW DTMLIKIGSG
RKGIISGMIG AVTGLVNAFA ALPPEVQQAV IAITALVGIG AGLYDMYRKS SRYGGVVAKS
FDFIGSKAKR LFTLLKSTKL GAGLESAFRS LSSTATDTFS SIGYKIAGAS SGLSVFKAGV
LGLTAVTTGV LVAALAAAAI GFVMWQAKAD AAKKQTDALK DTVRNSGDVY RKLADELKNG
NDGVSWFTKG TQNFTDALKT CGVSMDTFVS AVKGSKTAVT SFNKALDKTW KNSTPDRFGG
ITKQSVNILK EAFDQAKKSV KDAQNAMKEE QAQQKANALA SSQHADALMK GAEAAAKNSG
EILKVAKVED ILIAKFGASK NAINAQAEAI NNNVEAMQKY YGFAMDADQA LTNLDKTIRE
SSKSVAEAGK HWMDNTDAAD KNMSALTSLA KQTFETAEAM AKNGESVENV TKAFDKGSAA
FVDLAQKTGM SKDRAIALAK AWGISHDALM KLIGAAKQSN VEAKVTAKDN FSEVFKKQNL
SVKNLKGGKF EITGNNKKAL DAIAKVSKAK LDPKKLTLTL DKKQLQTALD AVKKMKPVEV
KAKVKADTKQ AKKAIADVSK AKVPDKTVKL KGDKRNLDST MSKAKAAKVP DKTVKLKGDK
RNLDSTMSKA KAAKVPDKTV KLKGNKTDFQ NKFNSAQSAR LRDKTVYFRA NANEVWSAIN
AINNASVHVN ARVHRANGGV VYGAGTGTSD SIPAMLSNGE YVMTAAAVQR IGVNMLDRLN
YGNSIAGSEK PASNTGGDML VNAVNGLRND MRALNDRLVA SGCVANSNVA EAMRSVFDDG
VKLKLDANGR EVMAGLLATP MSRELSHMID LGR
|
|---|
| |