63 homologs were found in PanDaTox collection
for query gene HMPREF0424_0994 on replicon NC_013721
Organism: Gardnerella vaginalis 409-05



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Replicon accession

Locus tag

Product

% identity

Alignment on query gene

Alignment on homolog gene

Length

Bit score

E-value

Organism name

Kingdom

Plasmid clonability

Plasmid unclonability p-value

Fosmid clonability

Fosmid unclonability p-value

Coverage Plot

PanDaTox homologs

Experimental validation
NC_013721  HMPREF0424_0994  phage tail tape measure protein, TP901 family  100 
 
 
1173 aa  2343    Gardnerella vaginalis 409-05  Bacteria  n/a    normal 
 
 
-
 
NC_009632  SaurJH1_1091  TP901 family phage tail tape measure protein  32.63 
 
 
2066 aa  171  6e-41  Staphylococcus aureus subsp. aureus JH1  Bacteria  normal  n/a   
 
 
-
 
NC_009487  SaurJH9_1070  TP901 family phage tail tape measure protein  32.63 
 
 
2066 aa  171  6e-41  Staphylococcus aureus subsp. aureus JH9  Bacteria  normal  0.917843  n/a   
 
 
-
 
NC_009674  Bcer98_2586  TP901 family phage tail tape measure protein  30.22 
 
 
1346 aa  166  2.0000000000000002e-39  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_011725  BCB4264_A2632  phage tail tape measure protein, family  32.23 
 
 
1283 aa  155  2.9999999999999998e-36  Bacillus cereus B4264  Bacteria  normal  n/a   
 
 
-
 
NC_011773  BCAH820_4374  phage tail tape measure protein, family, core region  29.8 
 
 
1549 aa  144  7e-33  Bacillus cereus AH820  Bacteria  n/a    normal 
 
 
-
 
NC_013216  Dtox_4245  phage tail tape measure protein, TP901 family  33.97 
 
 
1478 aa  142  3.9999999999999997e-32  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal 
 
 
-
 
NC_005945  BAS3793  prophage LambdaBa02, tape measure protein  31.01 
 
 
959 aa  135  3e-30  Bacillus anthracis str. Sterne  Bacteria  normal  n/a   
 
 
-
 
NC_007530  GBAA_4082  prophage LambdaBa02, tape measure protein  31.01 
 
 
959 aa  135  3e-30  Bacillus anthracis str. 'Ames Ancestor'  Bacteria  normal  0.27862  n/a   
 
 
-
 
NC_011658  BCAH187_A2248  putative prophage LambdaBa02, tape measure protein  30.77 
 
 
1671 aa  134  7.999999999999999e-30  Bacillus cereus AH187  Bacteria  normal  0.0144482  n/a   
 
 
-
 
NC_007519  Dde_3386  Phage tail tape measure protein TP901, core region  33.9 
 
 
733 aa  134  9e-30  Desulfovibrio desulfuricans subsp. desulfuricans str. G20  Bacteria  normal  0.576804  n/a   
 
 
-
 
NC_010182  BcerKBAB4_5330  TP901 family phage tail tape measure protein  30.53 
 
 
1127 aa  132  4.0000000000000003e-29  Bacillus weihenstephanensis KBAB4  Bacteria  n/a    n/a   
 
 
-
 
NC_008699  Noca_0550  TP901 family phage tail tape measure protein  31.03 
 
 
969 aa  126  2e-27  Nocardioides sp. JS614  Bacteria  normal  n/a   
 
 
-
 
NC_011772  BCG9842_B2400  phage protein  30.94 
 
 
1297 aa  119  3.9999999999999997e-25  Bacillus cereus G9842  Bacteria  normal  normal 
 
 
-
 
NC_008781  Pnap_2248  TP901 family phage tail tape measure protein  32.65 
 
 
914 aa  114  9e-24  Polaromonas naphthalenivorans CJ2  Bacteria  normal  0.678247  hitchhiker  0.00399711 
 
 
-
 
NC_013093  Amir_5635  phage tail tape measure protein, TP901 family  35.83 
 
 
1371 aa  114  1.0000000000000001e-23  Actinosynnema mirum DSM 43827  Bacteria  normal  n/a   
 
 
-
 
NC_013441  Gbro_1175  phage tail tape measure protein, TP901 family  33.12 
 
 
1343 aa  107  1e-21  Gordonia bronchialis DSM 43247  Bacteria  normal  n/a   
 
 
-
 
NC_008576  Mmc1_2034  TP901 family phage tail tape measure protein  32.09 
 
 
1183 aa  105  4e-21  Magnetococcus sp. MC-1  Bacteria  normal  0.5433  normal  0.337313 
 
 
-
 
NC_009997  Sbal195_2891  TP901 family phage tail tape measure protein  27.48 
 
 
1216 aa  105  7e-21  Shewanella baltica OS195  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2882  TP901 family phage tail tape measure protein  31.65 
 
 
1183 aa  103  2e-20  Magnetococcus sp. MC-1  Bacteria  normal  0.143408  normal  0.327483 
 
 
-
 
NC_008576  Mmc1_1338  TP901 family phage tail tape measure protein  31.65 
 
 
1183 aa  103  2e-20  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.413563 
 
 
-
 
NC_008576  Mmc1_2562  TP901 family phage tail tape measure protein  31.65 
 
 
1183 aa  103  3e-20  Magnetococcus sp. MC-1  Bacteria  normal  0.881784  normal  0.265945 
 
 
-
 
NC_008576  Mmc1_2805  TP901 family phage tail tape measure protein  32.09 
 
 
1183 aa  102  4e-20  Magnetococcus sp. MC-1  Bacteria  normal  normal 
 
 
-
 
NC_008576  Mmc1_2733  TP901 family phage tail tape measure protein  31.31 
 
 
1183 aa  101  7e-20  Magnetococcus sp. MC-1  Bacteria  normal  0.332181  hitchhiker  0.00107852 
 
 
-
 
NC_008576  Mmc1_1272  TP901 family phage tail tape measure protein  30.79 
 
 
1183 aa  98.6  6e-19  Magnetococcus sp. MC-1  Bacteria  normal  normal  0.0574053 
 
 
-
 
NC_011988  Avi_6196  phage tail protein  27.3 
 
 
759 aa  95.9  4e-18  Agrobacterium vitis S4  Bacteria  normal  n/a   
 
 
-
 
NC_008726  Mvan_1457  TP901 family phage tail tape measure protein  29 
 
 
1409 aa  95.9  4e-18  Mycobacterium vanbaalenii PYR-1  Bacteria  normal  0.143459  normal  0.730205 
 
 
-
 
NC_007963  Csal_1375  Phage tail tape measure protein TP901, core region  28.73 
 
 
877 aa  94.7  8e-18  Chromohalobacter salexigens DSM 3043  Bacteria  normal  n/a   
 
 
-
 
NC_010465  YPK_2303  TP901 family phage tail tape measure protein  24.35 
 
 
971 aa  88.2  7e-16  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.841337  n/a   
 
 
-
 
NC_010465  YPK_2350  TP901 family phage tail tape measure protein  24.52 
 
 
971 aa  86.7  0.000000000000003  Yersinia pseudotuberculosis YPIII  Bacteria  normal  0.5162  n/a   
 
 
-
 
NC_013517  Sterm_0868  phage tail tape measure protein, TP901 family  24.04 
 
 
981 aa  80.1  0.0000000000002  Sebaldella termitidis ATCC 33386  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_0849  phage tail tape measure protein, TP901 family  26.25 
 
 
936 aa  79.3  0.0000000000004  Haliangium ochraceum DSM 14365  Bacteria  normal  0.259729  normal 
 
 
-
 
NC_009674  Bcer98_2935  TP901 family phage tail tape measure protein  27.03 
 
 
975 aa  76.6  0.000000000003  Bacillus cytotoxicus NVH 391-98  Bacteria  normal  n/a   
 
 
-
 
NC_013440  Hoch_0659  phage tail tape measure protein, TP901 family  25.07 
 
 
936 aa  73.2  0.00000000003  Haliangium ochraceum DSM 14365  Bacteria  normal  normal 
 
 
-
 
NC_009975  MmarC6_0079  TP901 family phage tail tape measure protein  21.88 
 
 
987 aa  72.8  0.00000000003  Methanococcus maripaludis C6  Archaea  normal  n/a   
 
 
-
 
NC_007434  BURPS1710b_1688  hypothetical protein  62 
 
 
1354 aa  62.4  0.00000005  Burkholderia pseudomallei 1710b  Bacteria  normal  n/a   
 
 
-
 
NC_007650  BTH_II1056  hypothetical protein  62 
 
 
1366 aa  62  0.00000006  Burkholderia thailandensis E264  Bacteria  normal  0.414557  n/a   
 
 
-
 
NC_010498  EcSMS35_4349  TP901 family phage tail tape measure protein  26.38 
 
 
815 aa  62  0.00000007  Escherichia coli SMS-3-5  Bacteria  normal  normal  0.186092 
 
 
-
 
NC_011353  ECH74115_3026  phage tail tape measure protein, TP901 family  25 
 
 
815 aa  61.6  0.00000009  Escherichia coli O157:H7 str. EC4115  Bacteria  normal  normal  0.0149182 
 
 
-
 
NC_009667  Oant_0888  TP901 family phage tail tape measure protein  30.61 
 
 
757 aa  58.9  0.0000006  Ochrobactrum anthropi ATCC 49188  Bacteria  normal  0.322682  n/a   
 
 
-
 
NC_009616  Tmel_1449  TP901 family phage tail tape measure protein  24.59 
 
 
1120 aa  58.9  0.0000006  Thermosipho melanesiensis BI429  Bacteria  normal  n/a   
 
 
-
 
NC_009074  BURPS668_1517  putative phage HK97 tail length tape measure-related protein  54 
 
 
924 aa  58.5  0.0000008  Burkholderia pseudomallei 668  Bacteria  normal  0.813512  n/a   
 
 
-
 
NC_010086  Bmul_3876  phage tape measure protein  52.83 
 
 
1380 aa  55.5  0.000006  Burkholderia multivorans ATCC 17616  Bacteria  normal  normal  0.147169 
 
 
-
 
NC_012918  GM21_3658  phage tail tape measure protein, TP901 family  25.98 
 
 
733 aa  55.1  0.000007  Geobacter sp. M21  Bacteria  n/a    normal 
 
 
-
 
NC_011080  SNSL254_A4387  gp24  24.66 
 
 
813 aa  54.7  0.000009  Salmonella enterica subsp. enterica serovar Newport str. SL254  Bacteria  normal  normal  0.0182 
 
 
-
 
NC_009436  Ent638_3478  TP901 family phage tail tape measure protein  28.26 
 
 
809 aa  54.7  0.000009  Enterobacter sp. 638  Bacteria  normal  0.790573  normal  0.139413 
 
 
-
 
NC_009456  VC0395_1041  phage tail tape measure family protein  24.55 
 
 
605 aa  54.7  0.00001  Vibrio cholerae O395  Bacteria  normal  n/a   
 
 
-
 
NC_013216  Dtox_2149  hypothetical protein  37.04 
 
 
152 aa  52.4  0.00006  Desulfotomaculum acetoxidans DSM 771  Bacteria  normal  normal  0.017177 
 
 
-
 
NC_013170  Ccur_02660  phage tail tape measure protein, TP901 family  21.17 
 
 
1095 aa  49.7  0.0003  Cryptobacterium curtum DSM 15641  Bacteria  normal  hitchhiker  0.00000000274947 
 
 
-
 
NC_007964  Nham_2477  hypothetical protein  58.97 
 
 
732 aa  49.3  0.0005  Nitrobacter hamburgensis X14  Bacteria  normal  n/a   
 
 
-
 
NC_009720  Xaut_3717  hypothetical protein  64.52 
 
 
1127 aa  49.3  0.0005  Xanthobacter autotrophicus Py2  Bacteria  normal  normal  0.417403 
 
 
-
 
NC_011004  Rpal_3992  hypothetical protein  39.71 
 
 
738 aa  48.9  0.0006  Rhodopseudomonas palustris TIE-1  Bacteria  normal  n/a   
 
 
-
 
NC_007614  Nmul_A1436  hypothetical protein  50 
 
 
374 aa  48.5  0.0007  Nitrosospira multiformis ATCC 25196  Bacteria  normal  n/a   
 
 
-
 
NC_014165  Tbis_2177  hypothetical protein  30.58 
 
 
620 aa  48.5  0.0007  Thermobispora bispora DSM 43833  Bacteria  normal  normal  0.502286 
 
 
-
 
NC_009512  Pput_3367  prophage tail length tape measure  68.57 
 
 
970 aa  47.8  0.001  Pseudomonas putida F1  Bacteria  normal  normal  0.759316 
 
 
-
 
NC_007434  BURPS1710b_1716  putative phage HK97 tail length tape measure-related protein  44.05 
 
 
924 aa  47.4  0.002  Burkholderia pseudomallei 1710b  Bacteria  normal  0.309525  n/a   
 
 
-
 
NC_002978  WD0570  prophage P2W3, tail tape measure protein  23.96 
 
 
680 aa  47.4  0.002  Wolbachia endosymbiont of Drosophila melanogaster  Bacteria  normal  n/a   
 
 
-
 
NC_013171  Apre_0849  phage tail tape measure protein, TP901 family  23.22 
 
 
738 aa  46.6  0.003  Anaerococcus prevotii DSM 20548  Bacteria  decreased coverage  0.000280434  n/a   
 
 
-
 
NC_013204  Elen_2636  phage tail tape measure protein, TP901 family  25.07 
 
 
805 aa  46.6  0.003  Eggerthella lenta DSM 2243  Bacteria  normal  hitchhiker  0.0092648 
 
 
-
 
NC_008228  Patl_0709  TP901 family phage tail tape measure protein  29.01 
 
 
709 aa  45.8  0.005  Pseudoalteromonas atlantica T6c  Bacteria  normal  n/a   
 
 
-
 
NC_014212  Mesil_1213  phage tail tape measure protein, TP901 family  23.45 
 
 
1245 aa  45.4  0.006  Meiothermus silvanus DSM 9946  Bacteria  normal  normal  0.73999 
 
 
-
 
NC_009654  Mmwyl1_0574  TP901 family phage tail tape measure protein  27.62 
 
 
731 aa  45.1  0.007  Marinomonas sp. MWYL1  Bacteria  normal  0.0262287  normal  0.426184 
 
 
-
 
NC_008254  Meso_1884  hypothetical protein  52.38 
 
 
811 aa  45.1  0.008  Chelativorans sp. BNC1  Bacteria  normal  0.505665  n/a   
 
 
-
 
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