Gene HMPREF0424_0903 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHMPREF0424_0903 
Symboltal 
ID8709702 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameGardnerella vaginalis 409-05 
KingdomBacteria 
Replicon accessionNC_013721 
Strand+ 
Start bp1030251 
End bp1031354 
Gene Length1104 bp 
Protein Length367 aa 
Translation table11 
GC content52% 
IMG OID646483001 
Producttransaldolase 
Protein accessionYP_003374117 
Protein GI283783363 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0176] Transaldolase 
TIGRFAM ID[TIGR00876] transaldolase, mycobacterial type 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clones37 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACTGAAG CAACGCAGCG CACCAGCGAT TCCGGCGTTT CTATTTGGTT GGACGATTTG 
TCCCGTACCC GCATTGAGTC CGGCTCTTTG CAGGATTTGA TTGCTAATAA GAATGTTGTT 
GGCGTTACCA CCAACCCATC CATCTTCCAG AAGGCTTTGA GCCAGGTTGG CCCATACGAT 
GCACAGCTTA AGGAACTCGG CAAGGTCGAC GTTGAAACCG CTATCCGCGA GTTGACCACC 
ACCGACGTTC GTAACGCAAC CGATATCTTC CGCGAGATCG CTGAAAAGAC CGACTTCGTT 
GACGGCCGCG TCTCCATCGA AGTTGACCCA CGCTTGGCTC ACGATACTGC TAACACTGAG 
AAGCAGGCTG AAGAGCTTTG GGCAAAGGTT GATCGTCCAA ACGTTATGAT TAAGATTCCA 
GCAACTTTGG AAGGTCTTCC AGCTATCACC GCTACCCTTG CTAAGGGTAT TTCTGTGAAC 
GTAACCTTGA TCTTCTCCCT CGAGCGCTAC GAGCAGGTTA TCGACGCCTT CATCGAAGGT 
ATTGCTCAGG CAGATGCTAA CGGCCACGAC TTGAAGCACA TTGGTTCCGT AGCTTCCTTC 
TTCGTCTCCC GCGTTGATAG CGCTGTTGAC AAGCTCCTCG AAGCTAACGG CTCCGATGAA 
GCTAAGGCTC TTGAAGGCAA GGCTGCTGTT GCTAACGCTC GCTTGGCTTA CGAACTCTTC 
GAAAAGAAGT TCGCAGCTGA CCCACGTTGG GCTGCTCTTG AAGCTAAGGG CGCTAAGAAG 
CAGCGTCCAC TTTGGGCTTC TACCGGCACC AAGAACGCAG CTTACTCCGA CTGCAAGTAC 
GTTGACGAGT TGGTTGCTGA GCATGTTGTG AACACCATGC CAGAAAAGAC TTTGAACGCT 
CTTGCTGATC ACGGCAACGG CGCTGCTTCC GTTAAGGGCA CTTACGAAGA GAGCCACGCT 
GTTATGAACA AGCTTGCTGA GCTTGGCATC AACATTAAGG ACGTTACCGA CAAGCTTGAG 
GCCGACGGTG TTGCCGCCTT CATCAAGTCT TGGGATTCCG TGATTGCTGA CGTGCAGTCC 
GGCATCGATC GCGTAAACGC CTGA
 
Protein sequence
MTEATQRTSD SGVSIWLDDL SRTRIESGSL QDLIANKNVV GVTTNPSIFQ KALSQVGPYD 
AQLKELGKVD VETAIRELTT TDVRNATDIF REIAEKTDFV DGRVSIEVDP RLAHDTANTE 
KQAEELWAKV DRPNVMIKIP ATLEGLPAIT ATLAKGISVN VTLIFSLERY EQVIDAFIEG 
IAQADANGHD LKHIGSVASF FVSRVDSAVD KLLEANGSDE AKALEGKAAV ANARLAYELF 
EKKFAADPRW AALEAKGAKK QRPLWASTGT KNAAYSDCKY VDELVAEHVV NTMPEKTLNA 
LADHGNGAAS VKGTYEESHA VMNKLAELGI NIKDVTDKLE ADGVAAFIKS WDSVIADVQS 
GIDRVNA