| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0888 |
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| Symbol | |
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| ID | 8709752 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 1009904 |
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| End bp | 1010737 |
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| Gene Length | 834 bp |
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| Protein Length | 277 aa |
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| Translation table | 11 |
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| GC content | 39% |
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| IMG OID | 646482988 |
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| Product | NLPA lipoprotein |
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| Protein accession | YP_003374104 |
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| Protein GI | 283783350 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG1464] ABC-type metal ion transport system, periplasmic component/surface antigen |
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| TIGRFAM ID | [TIGR00363] lipoprotein, YaeC family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAAAAA TTAAAGTTAT TGCATCAATT ACAGCACTGG CAGCATTAGC GACTTTCACT
TTAAGTGGCT GCGGTAGCTC AAAAGCAGGC GCAAAGGATG ACAAGACCAT TACTGTTGCA
GCTTCACCTA CCCCGCATTC TGAAATCTTA AATAAAGTTG TAAAGCCAAT CTTGCAAAAA
GAAGGCTACA AGCTAGTAGT AAAGGAATTT ACTGACTACG TGCAGCCAAA TACAGCTACT
GAAGAAGGCG AAGTTGACGC AAACTACTAT CAGCATTTGC CTTATCTTGA CAACTTTAAT
AAGGAAAAGG GAACTCACCT TGTTTCAGTA GGTGGAATTC ATTTTGAACC ATTTGGATTG
TATCCAGGAA AAACCAAGAC GATTAAAGCA TTAGCAAACG GAGCAACTGT TGCAGTTCCA
AATGATCCTA CTAATGAGGC TCGCGCATTG CTTCTTTTGC AAGATGCCGG ATTGATTAAG
TTGAAGAATC CAAAGGATAT TAACGCTACT ACAAAAGATA TTACTGAGAA TCCTAAGAAT
TTGAAGTTTA AAGAACTTGA AGCGGCAACA GTTCCTACTG CCATTAAGGA TGTGGATCTT
GCTGCCATGA ACGGCAATTA CGCTATTCAA GCTGGTTTTA ACCCAACTAA AGACCCACTT
ACTTCAGAAA AAGTTGGAGG CATTGCGGCT AAAACTTATG AAAATATTAT TGTAGTAAAG
AAGGGCTCTG AAAAGTTTGC AAAAATCAAA GCCTTACTCA AAGCTTTGAA GACAAGCGAA
GTGCGCGACT ATATTACTAA AACTTACAAA GGCGCTGTGC TCCCTGTTTT CTAA
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| Protein sequence | MRKIKVIASI TALAALATFT LSGCGSSKAG AKDDKTITVA ASPTPHSEIL NKVVKPILQK
EGYKLVVKEF TDYVQPNTAT EEGEVDANYY QHLPYLDNFN KEKGTHLVSV GGIHFEPFGL
YPGKTKTIKA LANGATVAVP NDPTNEARAL LLLQDAGLIK LKNPKDINAT TKDITENPKN
LKFKELEAAT VPTAIKDVDL AAMNGNYAIQ AGFNPTKDPL TSEKVGGIAA KTYENIIVVK
KGSEKFAKIK ALLKALKTSE VRDYITKTYK GAVLPVF
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