Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0824 |
Symbol | |
ID | 8709469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | + |
Start bp | 932097 |
End bp | 934409 |
Gene Length | 2313 bp |
Protein Length | 770 aa |
Translation table | 11 |
GC content | 39% |
IMG OID | 646482924 |
Product | cobalt ABC transporter, ATP-binding protein |
Protein accession | YP_003374041 |
Protein GI | 283783287 |
COG category | [R] General function prediction only |
COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
TIGRFAM ID | [TIGR01166] cobalt transport protein ATP-binding subunit |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 31 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGAAG CTAAAAAGCA CATGATTGAA AACAATGCGC AAGTAGTGTT GCGAAATATT TGCTATAGCT ACGATGATGG AAAAACTTGG ACGCTTAATA ATTTAAGTCT TACAATTAAC GCTGGCGAGC GCTTGGCAAT TGTAGGATTA AACGGTTCTG GTAAGTCAAC CTTGGCAAAA ATTATTGCAG GTTTAACGGC ACCAGATAGC GGTTACGTTA CATTGTGCGG CGAAAAAGTT TTTGAAAATA CTACTGCTTG TGCTGAATCA TATAAAAATG CGCGAAAATA TATTGGCGCA CTTTTCCAAA GTCCTGAAGA TCAGATTATT ACAACAATTA CTGAAGAAGA TGTTGCTTTT GGACTAGAAA ATTTGCAATT CCCTCAAAAA GCAATGTATA AGCGCATCAG TGAAGCTTTA AAAACTGTTC ATATGGAAGA TAAACGTTAC GCTGACCCTA GCACTATGAG CGGCGGACAG CAGCAACGAG TAGCTTTAGC AAGTGCTATT GCTATGAATT CTAAACTGCT TGTTCTTGAC GAACCTACTT CTATGCTCGA CTCGTTCGCA CGCAAAGACG TTGATGCTTT ATTTGATAAT TTGCACAAAA ATGGCACTAC TATCGTTCAA ATTACACACA ATTTTGAGGA ATGCAAACGC GCAAATCGCA TACTTTTACT AGAAAATGGC ATCCTGAAAG AAGTAAGCTT TAATGGTTTA AAAACTTACT TTTCTAATAT TGAGTTGGCG AATAATCATT TAACTAAAAT TAGCGAGAGT AAAAACTTAA CAGATAGTAG ACGCAAAGAA AATGAGTCAG ATATCGCTGT AGAAATTTCC GGACTAACTG TTCAATATGA TAAAACTTCA CCAGCCGTTA TTGACGATTA TTCACTAACT GTTAAAAACG GCGAAACAGT TGCAATAATG GGCGAAAACG GCTGCGGTAA ATCAACTCTT GCTAAAACAA TGTGTGGACT GTTAAAAGCC AATTCAGGAA ACATAACAGT ACATGGCATA TCTGTTAGAG GTAAAACATC TAAAATAATA CGACAAAAAC TACATCAAAC AATTGGCTAC GTTATGCAAC TGCCAGAACA ACAGCTTTTT GCTGATACAG TACGGAACGA TGTCGCTTAT GGACCAAAAA ATTTTGGGCT GAAAGGCAAT GCTCTTAAAG AACGTGTGGA TGAAACCCTA CGCTTATTGA GCCTTGAGAA TTTGGCTGAA AAATCACCTT TTGCGCTTTC TGGAGGTCAG CAGCGTCTTG TTGCAATAGC TGGCATTTTA GCTTGCAAGC CACGCGTGCT CGTACTGGAT GAGCCAACAG CTGGATTAGA TTTTGAAGCT GCGTTACGTA TTCGAGAAAT TCTTGGAACG CTACACAATC AAGGCGTAAC CATAATACTT ATTACGCATA ATCTTCAAGA AGCAGAAGAT TTAGGCGCAA GATTAGTAAC ATTAAAAGCA AATAATAAAG CAAGCAACAC AGCAAAAAAT ACTGAAAATA ACAAAAACAA AGAAAGTTCC GCAAAAGCAA AAACAACTTC GCTACTTAAA TCTTTTGACC CACGCGCGAC GCTGCTATCA TGCTTTATTC TTATGCTAAG TGCTTTTAGT ATTACTAACT ACATACAGTT AGCTATTCTT GCTTTTGTAA CATTTACTCT AACTGTTGCT GCAAAAATAC CATTTGTTAA GCTTATTGCT TCACTGCACA TGATTATTGC GGTATTTGTT TTCTCCGGAT TACTTAACAT TCTGGCAGTG CGAACCGGCA CAGTGCTAGC AAATATTGCA ACTATTCCTA TTACAACTGA TGGAATTAAT TACGCAATAC TTTTTGCAAC ACGATTCTCG CTTGTTATTA TCATTGGAGC AATTCTAGTA CTAACAATGA GTCAGACAAC GCTTAACGAA TCTTGCACAC GATTACTATC ACCACTTCGA CATATTGGAA TACCAACGCA AGAAATAGCA CTTATTATGA GCCTAGCGCT ACGGTTCTTA CCAACACTCA GTGCAGAAGC GCACTCTGTG GCACTAGCGC AAATCGCTCG AGGAAGTAGC ATTCGAGATG GTTCTTTTAA GCAACGAGTA CACGCTATAA CAGCTTTAAT AGTGCCAGGT TTTGCAGGAG TAATTCGCCA TGCTGACACT CTTGCGCTCG CATTAGATGC ACGCTGTTAC ACGCCTGGAG CTGAAAGAAC TCACTTGCAC TCATGGAAAA TGCGTATAAA AGATGTGCTG CTATCAGTAG TTACTCTTGG TGTTGTAAGC GCGATTATTG TGTGCAAAAT GCTACCTTTG TAA
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Protein sequence | MNEAKKHMIE NNAQVVLRNI CYSYDDGKTW TLNNLSLTIN AGERLAIVGL NGSGKSTLAK IIAGLTAPDS GYVTLCGEKV FENTTACAES YKNARKYIGA LFQSPEDQII TTITEEDVAF GLENLQFPQK AMYKRISEAL KTVHMEDKRY ADPSTMSGGQ QQRVALASAI AMNSKLLVLD EPTSMLDSFA RKDVDALFDN LHKNGTTIVQ ITHNFEECKR ANRILLLENG ILKEVSFNGL KTYFSNIELA NNHLTKISES KNLTDSRRKE NESDIAVEIS GLTVQYDKTS PAVIDDYSLT VKNGETVAIM GENGCGKSTL AKTMCGLLKA NSGNITVHGI SVRGKTSKII RQKLHQTIGY VMQLPEQQLF ADTVRNDVAY GPKNFGLKGN ALKERVDETL RLLSLENLAE KSPFALSGGQ QRLVAIAGIL ACKPRVLVLD EPTAGLDFEA ALRIREILGT LHNQGVTIIL ITHNLQEAED LGARLVTLKA NNKASNTAKN TENNKNKESS AKAKTTSLLK SFDPRATLLS CFILMLSAFS ITNYIQLAIL AFVTFTLTVA AKIPFVKLIA SLHMIIAVFV FSGLLNILAV RTGTVLANIA TIPITTDGIN YAILFATRFS LVIIIGAILV LTMSQTTLNE SCTRLLSPLR HIGIPTQEIA LIMSLALRFL PTLSAEAHSV ALAQIARGSS IRDGSFKQRV HAITALIVPG FAGVIRHADT LALALDARCY TPGAERTHLH SWKMRIKDVL LSVVTLGVVS AIIVCKMLPL
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