| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0775 |
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| Symbol | allB |
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| ID | 8709921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 874958 |
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| End bp | 876334 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 646482876 |
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| Product | allantoinase |
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| Protein accession | YP_003373994 |
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| Protein GI | 283783240 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0044] Dihydroorotase and related cyclic amidohydrolases |
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| TIGRFAM ID | [TIGR00857] dihydroorotase, multifunctional complex type
[TIGR03178] allantoinase |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.257845 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTACG ATGTAGTAAT CACAAACGGT TTGGTTGTAT TCGATAATGA AGCAACTAAA
GCCGATATAG CAATTAAAGA CGGCAAGTTT GCTGCTTTTG GAAGCAACTT TACAGCCGAT
AAAACTATTG ATGCAACTGA TTTAATAGTT GTTCCTGGAA AAGTTGATTC TCATGTTCAT
ATTAATGCTC CAGGCGGCGG CGTTCGCGAC GATTGGGAAG GTTTTGTAAC AGCAACTTCT
GCCGGCGCAA AAGGTGGTAT TACTACAATG CTGCAAATGC CTTGCAATCA GATTCCTGCT
ACTACTGATG GAAAATCATT TGAGGCAGTG CTTAAAGAAG CCGACGGAAA GCTCAAGGTT
GATGTTGGTC AAACTGGTGG CTTGGAACCA CAAAACCTCA ATGGCGGAAT ATGCGAGCAA
GATAAGCAGG GTGTCGTTAA TTACAAGGCA TTCCTTGGAA CTACTGGCGA CAAGGATTTG
CAAGTTGATT TGTATAATTG CGACGATTAT TCCCTCTACA CCGGTATGCA GCAGATTGCA
AAAACCGGCA AAATTTTGAT TATGCATTGC GAAAACGCTC CTATTACAGA CCAGCTTGGA
AAGAAAGCTC ATCAAATGGG AGCTAGAAAG CTTTCTGAGT TCGTAGCAAC CAGACCTGTT
TTCACTGAAG TTGAAGCGAT TGAACGCGCT TGTCTTTTTG CTAAAGAAAC TGGATGCAGA
ATTCATATTG TTCATGTTTC TTCACCAGAA GGTGCTCAAG CTGTTGCTGA CGCTCGTAAG
AATGGCGTAG ACGTAAGCTG CGAAACTTGC AACCATTACC TGTATTTCGA CACTTCTGAG
CTTGACGAGA TTGGAAATAT CGCTAAGTGC ACTCCGCCAA TTCGTGACAA GGAAAACCAG
AATGGCTTGT GGGAAAAGGT TTTTGACGGT TCTATTAACT TCATTGTTTC CGACCATTCA
CCAGCTCCTT TGAGTTTGAA GCAAACTGAT GATGCTTTCA CAGCTTGGGG TGGTATTGGT
AGCGTTCAAA ACGATGTTGA TGTGTTCTTT GATGAAGCTG TGCAAAAGCG CGGAATGTCA
TTAACTCAAT TTGTGGCATT GAATTCTAGC AATTCTGCAA AACGCTTCGA TTTGAAAGGA
AAAGGCAGCA TACGTTTGGG TTATGACGCA GATCTTGCAT TCATTAAACC AAATGCTCCT
TATGTTCTTA AAGCTGAGGA TCTTGAGTAT CGAAACAAGT TCAGCCCGTA CGTTGGTCGC
ACTATTGGCT GCCAGGTGGT AAGAACTTTG CTTCGCGGTG AAGAAATTTA CAGCCAAGAA
AATGGAGTTT GCAAAGACTT TAAGGGCAAG TTTATTCTTC ATCCAGCTAA GGATTAG
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| Protein sequence | MNYDVVITNG LVVFDNEATK ADIAIKDGKF AAFGSNFTAD KTIDATDLIV VPGKVDSHVH
INAPGGGVRD DWEGFVTATS AGAKGGITTM LQMPCNQIPA TTDGKSFEAV LKEADGKLKV
DVGQTGGLEP QNLNGGICEQ DKQGVVNYKA FLGTTGDKDL QVDLYNCDDY SLYTGMQQIA
KTGKILIMHC ENAPITDQLG KKAHQMGARK LSEFVATRPV FTEVEAIERA CLFAKETGCR
IHIVHVSSPE GAQAVADARK NGVDVSCETC NHYLYFDTSE LDEIGNIAKC TPPIRDKENQ
NGLWEKVFDG SINFIVSDHS PAPLSLKQTD DAFTAWGGIG SVQNDVDVFF DEAVQKRGMS
LTQFVALNSS NSAKRFDLKG KGSIRLGYDA DLAFIKPNAP YVLKAEDLEY RNKFSPYVGR
TIGCQVVRTL LRGEEIYSQE NGVCKDFKGK FILHPAKD
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