| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0766 |
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| Symbol | cas1 |
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| ID | 8709011 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 868977 |
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| End bp | 870056 |
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| Gene Length | 1080 bp |
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| Protein Length | 359 aa |
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| Translation table | 11 |
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| GC content | 30% |
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| IMG OID | 646482868 |
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| Product | CRISPR-associated endoribonuclease Cas2 |
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| Protein accession | YP_003373990 |
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| Protein GI | 283783236 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG2176] DNA polymerase III, alpha subunit (gram-positive type) |
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| TIGRFAM ID | [TIGR00573] exonuclease, DNA polymerase III, epsilon subunit family
[TIGR01873] CRISPR-associated endoribonuclease Cas2, E. coli subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0695815 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCGTTAA CTGTGATTAC GATGACGAAC TGTCCACTAT CTTTAAGAGG TGATTTAACT
AAGTGGATGC AAGAAATAGC ATCAGGCGTT TACGTCGGCA ATTTTAATAG TCGAGTCCGA
GAAGAATTAT GGAAGCGTAT AGAAGATAGT GTTGGCAATG GTGCTGTAAC AATGAGCTTT
TCTTCTAGAA ATGAAATTGG CTATGATTTT AAAACTATCC ATTCGCATCG TGAAGTGGTT
TATTCAGATG GATTGCCTCT AGTACGTATT CCAACAGTTG ATACACTAGA AAACGATATT
AAACATGGAT TTAGCGATGC AGCACATTTT CATAATGCAA AGAAATTTTC AAATATAAGG
CGTAAAAATA TTAATACTCC TTCTAGCACA ATTGAAAATA ATCTTGCTAA TGAAAATATT
AGTTATCTAA GTTATGATAA TGCTTCTCAA ACTGCAAAAT TTGCTACGGA TAATGAAGAG
ATAACTTGTA CCGATTACTG GAAGGATTTT ATAGATAAAA TAGATAAAAA TTTTGTTGTA
ATAGATTGCG AAACTACAGG TTTAAATAGC AAAGTTGATA AAATCATTGA AATTGGGGCC
GTTAAGTTCA TTGATGGAAA AATTGAAGAA TTCCAGAAAT TAATAAATAT TAATTGCGAT
AGCGTTAGTA ATTTTAACAA AAATAATTTT ATTCCTAATG AAATTATTGA GTTAACTGGT
ATTACATCCA ACATGCTTGA ATCTTATGGT GTCAGATTAG ATTTAGCATT AAAAGAATTT
ATTAATTTTG TCGAAAGATT ACCTGTACTT GGATATAACG TACAATTTGA TATGTCATTT
TTAAATTCTG CTTTATCTTC ATTAGATGAA AGATTTGATC ATTCTCTTTC AATTAACAAA
ATTTTTGATA TTTCTCGTTT TGTAAAGAAA GAAAAGAAAT TTTTAAAAAA CTACCAATTA
AAAACAGTGC TGCACGAATA CAACATTGCT GAATCTGTTC CACATAGAGC TCTTCTGGAT
GCTAGACTAA CAGCGCATCT TGTTTTTAAT TTGACAGAAT TGTTAAAATT TCTTGCATAA
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| Protein sequence | MPLTVITMTN CPLSLRGDLT KWMQEIASGV YVGNFNSRVR EELWKRIEDS VGNGAVTMSF
SSRNEIGYDF KTIHSHREVV YSDGLPLVRI PTVDTLENDI KHGFSDAAHF HNAKKFSNIR
RKNINTPSST IENNLANENI SYLSYDNASQ TAKFATDNEE ITCTDYWKDF IDKIDKNFVV
IDCETTGLNS KVDKIIEIGA VKFIDGKIEE FQKLININCD SVSNFNKNNF IPNEIIELTG
ITSNMLESYG VRLDLALKEF INFVERLPVL GYNVQFDMSF LNSALSSLDE RFDHSLSINK
IFDISRFVKK EKKFLKNYQL KTVLHEYNIA ESVPHRALLD ARLTAHLVFN LTELLKFLA
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