| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | HMPREF0424_0569 |
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| Symbol | |
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| ID | 8709997 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Gardnerella vaginalis 409-05 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013721 |
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| Strand | + |
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| Start bp | 616111 |
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| End bp | 617688 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 43% |
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| IMG OID | 646482678 |
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| Product | L-serine ammonia-lyase |
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| Protein accession | YP_003373805 |
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| Protein GI | 283783051 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1760] L-serine deaminase |
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| TIGRFAM ID | [TIGR00720] L-serine dehydratase, iron-sulfur-dependent, single chain form |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0531592 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTGTCGAC GTGAGCTTAA TGATGCTTAC AATAGATACG TGTTTAGTAT TTTAGAGATG
TTTTCAGTAG GCGTTGGTCC TAGTTCATCA CATACAGTAG GTCCTATGCG AGCTGCGTGT
TCGTTTGTTT CATCGCTTAA AAAAAGTGGT AGTCTTGCAA ACGTTGCGCA CGTAAGTGTG
ACTCTTTACG GATCACTGTC TTTAACAGGT CTTGGTCATG GCACTGATCG CGCTTGCGTT
GCAGGTCTTG AAGGAAATCT TCCAGATAAT GTAGACACTG ATCATATGCT TACTATTCGT
CAGGAATGCA AAAAAACTGG CACTTTAACG CTCGCAGGTG AACATACTAT TGCTTTTGAT
TACGATAAGG ACGTAATTTT TGAAAAATGG ATGCGAATGG TTGTTCATCC TAATGGAATG
CGTTTTGTTG CAACTGATTC TGACGGAAAT AAAATCGATG AGCAAGTTTG GTATTCAATT
GGCGGCGGAT TTATTCGTCA AGGGTGTGCA GATGATGCAA TGGTTGGCTT GCATGAGCGT
GTTACTGAGC AAGATGAAAA TAATGCCAAT AAGAATGGTG TAAGCGAGAA TAATAGCGAA
AGTAATAGCG AAAGTAATAA CGGAAATAGT AGTGATAATG CTGCAAGCTC CTCAAATCAA
ACAAAAGATT CCACTGTACC TTATCCTTTT ACTTCATGCG ACGAGCTTAT AAATATTTGC
CGAGAAAAGT ATATGTCAAT AAGCGATGTT GTGTGGCAAA ACGAGCTTGC ATTGCATGAA
GGTGATGCTG ACTACGTGCG CAACTATTTG CTGCATGTTT GGAAAGTTAT GAGTAAATGT
GTAGAAAACG GATGCAACTC AAAGCAACCG ATTTTGCCAG GAGGTCTTGA TGTGCCTCGC
AGAGCTCCTC ACATGTATGA GCGTTTGGCT GCAAATTCAG ACATGCTTCG TAACAATCGT
CGTCGTTCGG ATGCTGCTTT AGAAAGTTCA GACTCTGCGT GGGTTAATCT TTTTGCGCTC
GCTGTTAGTG AAGAGAATGC TGGTGGTGGG CGTATTGTTA CTGCTCCAAC GAATGGTTCT
GCAGGAATTA TTCCTGCAGT ATTGCAGTAT TATTGGCGAT TTGTTGATTC TGCTAATGAA
GATGGAGTTG TGCGATTCTT GCTTGCTGCA GGTGCTGTTG GTTACTTATT TAAACGAAAT
GCTTCAATTT CTGGAGCTGA AGTTGGTTGT CAAGGAGAGG TTGGTTCTGC TTGTTCGATG
GCTGCTGCAG GATTGTGCGA AGTGTTGGGA GGGACCCCGG AACAGGTTGA AAATGCTGCA
GAAATCGGTA TAGAACACCA TTTGGGATTA ACTTGCGATC CTGTAGGCGG TTTGGTACAA
ATTCCTTGTA TTGAGCGCAA TGCTATGGCT GCAAATACAG CAATTAATGC TGTTCGAATG
GCAATGCTTG GAGATGGCTC GCACATGGTA AGCCTTGACA AAGCGATTAA GACTATGAAA
GAAACTGGTC ATGACATGAT GTCTAAATAT CGCGAAACCT CAAAAGGTGG GCTAGCTGTA
AACGTTGTTG AGTGCTAA
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| Protein sequence | MCRRELNDAY NRYVFSILEM FSVGVGPSSS HTVGPMRAAC SFVSSLKKSG SLANVAHVSV
TLYGSLSLTG LGHGTDRACV AGLEGNLPDN VDTDHMLTIR QECKKTGTLT LAGEHTIAFD
YDKDVIFEKW MRMVVHPNGM RFVATDSDGN KIDEQVWYSI GGGFIRQGCA DDAMVGLHER
VTEQDENNAN KNGVSENNSE SNSESNNGNS SDNAASSSNQ TKDSTVPYPF TSCDELINIC
REKYMSISDV VWQNELALHE GDADYVRNYL LHVWKVMSKC VENGCNSKQP ILPGGLDVPR
RAPHMYERLA ANSDMLRNNR RRSDAALESS DSAWVNLFAL AVSEENAGGG RIVTAPTNGS
AGIIPAVLQY YWRFVDSANE DGVVRFLLAA GAVGYLFKRN ASISGAEVGC QGEVGSACSM
AAAGLCEVLG GTPEQVENAA EIGIEHHLGL TCDPVGGLVQ IPCIERNAMA ANTAINAVRM
AMLGDGSHMV SLDKAIKTMK ETGHDMMSKY RETSKGGLAV NVVEC
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