Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | HMPREF0424_0564 |
Symbol | |
ID | 8709640 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Gardnerella vaginalis 409-05 |
Kingdom | Bacteria |
Replicon accession | NC_013721 |
Strand | - |
Start bp | 610514 |
End bp | 610957 |
Gene Length | 444 bp |
Protein Length | 147 aa |
Translation table | 11 |
GC content | 41% |
IMG OID | 646482674 |
Product | toxin-antitoxin system, antitoxin component, HicB family |
Protein accession | YP_003373801 |
Protein GI | 283783047 |
COG category | [S] Function unknown |
COG ID | [COG1598] Uncharacterized conserved protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.00598996 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACTAAAA CAAATAAATC TAGCAAAAAT ATCTCTCACA AAAATAAGTC CAAAACACTA ACAAATAAAA GACTCAGCTA CTACATGTCA CTCCCATACA AGCTGGAAAT TGTAAAAGAT CCGGATGAAG GTGGATTTGT GTCCTACTAC CCTGATTTGC CAGGATGCAT AAGTTCAGGA GACTCCGAAC AGGAAGCAGC AGCAAATGCG CAGGACGCTA AGCATGCTTG GTTTGAAGCA GCTCTTGAAA GCAAAATCAA CATAAAAGAG CCGTCTTACC ATGAGCTGAA TGACTATTCT GGTCAATTCA AACTGCGTCT ACCTAAAGAA TTACACAGGC AATTGGCTGA GCAATCTCAA GCCGAAGGAA TAAGCATGAA CCAGTATTGC GTGTATCTTC TTTCGCAAAA TAACGCTATT GAACGCGTGC TTGAGCGAGC ATAG
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Protein sequence | MTKTNKSSKN ISHKNKSKTL TNKRLSYYMS LPYKLEIVKD PDEGGFVSYY PDLPGCISSG DSEQEAAANA QDAKHAWFEA ALESKINIKE PSYHELNDYS GQFKLRLPKE LHRQLAEQSQ AEGISMNQYC VYLLSQNNAI ERVLERA
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